Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim63Q38HM4 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim63Q38HM4 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim63Q38HM4 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim63Q38HM4 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Haglr-201ENSMUST00000100000 2085 ntBASIC15.3■□□□□ 0.04
Trim63Q38HM4 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Gm12818-201ENSMUST00000117562 1349 ntBASIC15.3■□□□□ 0.04
Trim63Q38HM4 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim63Q38HM4 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Gm15853-202ENSMUST00000195518 2041 ntBASIC15.29■□□□□ 0.04
Trim63Q38HM4 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Gm43672-201ENSMUST00000199072 1731 ntBASIC15.29■□□□□ 0.04
Trim63Q38HM4 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim63Q38HM4 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim63Q38HM4 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 106.4 ms