Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.12■□□□□ 0.49
ABCA4P78363 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
ABCA4P78363 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ABCA4P78363 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ABCA4P78363 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.12■□□□□ 0.49
ABCA4P78363 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ABCA4P78363 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ABCA4P78363 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
ABCA4P78363 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
ABCA4P78363 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ABCA4P78363 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.11■□□□□ 0.49
ABCA4P78363 AC128676.1-201ENST00000454392 318 ntBASIC18.11■□□□□ 0.49
ABCA4P78363 AC026366.1-201ENST00000488803 879 ntBASIC18.11■□□□□ 0.49
ABCA4P78363 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.11■□□□□ 0.49
ABCA4P78363 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.11■□□□□ 0.49
ABCA4P78363 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.11■□□□□ 0.49
ABCA4P78363 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
ABCA4P78363 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
ABCA4P78363 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ABCA4P78363 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ABCA4P78363 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ABCA4P78363 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ABCA4P78363 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.11■□□□□ 0.49
ABCA4P78363 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.11■□□□□ 0.49
ABCA4P78363 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ABCA4P78363 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
ABCA4P78363 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ABCA4P78363 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.11■□□□□ 0.49
ABCA4P78363 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.11■□□□□ 0.49
ABCA4P78363 AC097658.1-201ENST00000475555 843 ntBASIC18.11■□□□□ 0.49
ABCA4P78363 AC003102.1-202ENST00000563394 1796 ntBASIC18.11■□□□□ 0.49
ABCA4P78363 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ABCA4P78363 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.11■□□□□ 0.49
ABCA4P78363 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
ABCA4P78363 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.1■□□□□ 0.49
ABCA4P78363 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
ABCA4P78363 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.1■□□□□ 0.49
ABCA4P78363 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
ABCA4P78363 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
ABCA4P78363 AC243732.1-201ENST00000612648 864 ntBASIC18.1■□□□□ 0.49
ABCA4P78363 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
ABCA4P78363 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.1■□□□□ 0.49
ABCA4P78363 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.1■□□□□ 0.49
ABCA4P78363 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
ABCA4P78363 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.1■□□□□ 0.49
ABCA4P78363 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.1■□□□□ 0.49
ABCA4P78363 AL591742.1-201ENST00000604433 565 ntBASIC18.1■□□□□ 0.49
ABCA4P78363 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.1■□□□□ 0.49
ABCA4P78363 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
ABCA4P78363 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.09■□□□□ 0.49
ABCA4P78363 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.09■□□□□ 0.49
ABCA4P78363 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 AL355472.2-201ENST00000422958 438 ntBASIC18.09■□□□□ 0.49
ABCA4P78363 UNC93B4-201ENST00000505679 747 ntBASIC18.09■□□□□ 0.49
ABCA4P78363 AP003097.1-201ENST00000530657 1135 ntBASIC18.09■□□□□ 0.49
ABCA4P78363 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.09■□□□□ 0.49
ABCA4P78363 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.09■□□□□ 0.49
ABCA4P78363 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.09■□□□□ 0.49
ABCA4P78363 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
ABCA4P78363 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
ABCA4P78363 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ABCA4P78363 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
ABCA4P78363 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ABCA4P78363 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.08■□□□□ 0.48
ABCA4P78363 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
ABCA4P78363 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.08■□□□□ 0.48
ABCA4P78363 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.08■□□□□ 0.48
ABCA4P78363 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
ABCA4P78363 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ABCA4P78363 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ABCA4P78363 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.08■□□□□ 0.48
ABCA4P78363 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.08■□□□□ 0.48
ABCA4P78363 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ABCA4P78363 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
ABCA4P78363 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.07■□□□□ 0.48
ABCA4P78363 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.07■□□□□ 0.48
ABCA4P78363 MIR1224-201ENST00000408193 85 ntBASIC18.07■□□□□ 0.48
ABCA4P78363 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ABCA4P78363 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms