Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RPS2P4-201ENST00000476944 856 ntBASIC18.17■□□□□ 0.5
ABCA4P78363 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.17■□□□□ 0.5
ABCA4P78363 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.17■□□□□ 0.5
ABCA4P78363 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.17■□□□□ 0.5
ABCA4P78363 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ABCA4P78363 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.17■□□□□ 0.5
ABCA4P78363 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.16■□□□□ 0.5
ABCA4P78363 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.16■□□□□ 0.5
ABCA4P78363 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.16■□□□□ 0.5
ABCA4P78363 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.16■□□□□ 0.5
ABCA4P78363 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.16■□□□□ 0.5
ABCA4P78363 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 AC120498.10-201ENST00000621827 505 ntBASIC18.16■□□□□ 0.5
ABCA4P78363 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
ABCA4P78363 RARRES2P4-201ENST00000514074 484 ntBASIC18.15■□□□□ 0.5
ABCA4P78363 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.15■□□□□ 0.5
ABCA4P78363 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.15■□□□□ 0.5
ABCA4P78363 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.15■□□□□ 0.5
ABCA4P78363 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.15■□□□□ 0.5
ABCA4P78363 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.15■□□□□ 0.5
ABCA4P78363 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.15■□□□□ 0.5
ABCA4P78363 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 MIPEPP3-201ENST00000412105 444 ntBASIC18.15■□□□□ 0.5
ABCA4P78363 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ABCA4P78363 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.15■□□□□ 0.5
ABCA4P78363 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ABCA4P78363 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
ABCA4P78363 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ABCA4P78363 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.14■□□□□ 0.5
ABCA4P78363 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
ABCA4P78363 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
ABCA4P78363 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
ABCA4P78363 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
ABCA4P78363 AC093787.1-201ENST00000450396 207 ntBASIC18.14■□□□□ 0.49
ABCA4P78363 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.14■□□□□ 0.49
ABCA4P78363 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.14■□□□□ 0.49
ABCA4P78363 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.14■□□□□ 0.49
ABCA4P78363 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ABCA4P78363 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ABCA4P78363 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ABCA4P78363 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
ABCA4P78363 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.14■□□□□ 0.49
ABCA4P78363 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.14■□□□□ 0.49
ABCA4P78363 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
ABCA4P78363 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
ABCA4P78363 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
ABCA4P78363 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.14■□□□□ 0.49
ABCA4P78363 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
ABCA4P78363 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.14■□□□□ 0.49
ABCA4P78363 AC053503.5-201ENST00000601508 636 ntBASIC18.14■□□□□ 0.49
ABCA4P78363 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.13■□□□□ 0.49
ABCA4P78363 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
ABCA4P78363 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.13■□□□□ 0.49
ABCA4P78363 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
ABCA4P78363 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.13■□□□□ 0.49
ABCA4P78363 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ABCA4P78363 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
ABCA4P78363 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
ABCA4P78363 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.13■□□□□ 0.49
ABCA4P78363 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ABCA4P78363 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.13■□□□□ 0.49
ABCA4P78363 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ABCA4P78363 AC006058.3-201ENST00000606217 1069 ntBASIC18.13■□□□□ 0.49
ABCA4P78363 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.13■□□□□ 0.49
ABCA4P78363 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ABCA4P78363 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ABCA4P78363 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ABCA4P78363 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.13■□□□□ 0.49
ABCA4P78363 AC010980.2-201ENST00000587099 1412 ntBASIC18.13■□□□□ 0.49
ABCA4P78363 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ABCA4P78363 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ABCA4P78363 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ABCA4P78363 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.12■□□□□ 0.49
ABCA4P78363 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
ABCA4P78363 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
ABCA4P78363 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ABCA4P78363 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
ABCA4P78363 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms