Protein–RNA interactions for Protein: Q8CDD9

Lrif1, Ligand-dependent nuclear receptor-interacting factor 1, mousemouse

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lrif1Q8CDD9 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lrif1Q8CDD9 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lrif1Q8CDD9 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lrif1Q8CDD9 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lrif1Q8CDD9 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lrif1Q8CDD9 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lrif1Q8CDD9 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lrif1Q8CDD9 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Gm21168-201ENSMUST00000199646 1096 ntBASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lrif1Q8CDD9 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.33■□□□□ 0.53
Lrif1Q8CDD9 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Lrif1Q8CDD9 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Lrif1Q8CDD9 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Lrif1Q8CDD9 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lrif1Q8CDD9 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lrif1Q8CDD9 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lrif1Q8CDD9 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lrif1Q8CDD9 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Lrif1Q8CDD9 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lrif1Q8CDD9 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Lrif1Q8CDD9 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lrif1Q8CDD9 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.32■□□□□ 0.52
Lrif1Q8CDD9 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Lrif1Q8CDD9 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.32■□□□□ 0.52
Lrif1Q8CDD9 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lrif1Q8CDD9 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lrif1Q8CDD9 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Lrif1Q8CDD9 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lrif1Q8CDD9 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Gm43017-201ENSMUST00000198296 752 ntBASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Spcs1-204ENSMUST00000226782 949 ntBASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.31■□□□□ 0.52
Lrif1Q8CDD9 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lrif1Q8CDD9 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lrif1Q8CDD9 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lrif1Q8CDD9 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Lrif1Q8CDD9 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lrif1Q8CDD9 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.29■□□□□ 0.52
Lrif1Q8CDD9 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms