Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sh3rf1Q69ZI1 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sh3rf1Q69ZI1 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.83■□□□□ 0.6
Sh3rf1Q69ZI1 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sh3rf1Q69ZI1 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Sh3rf1Q69ZI1 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sh3rf1Q69ZI1 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Sh3rf1Q69ZI1 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 AV356131-201ENSMUST00000206201 750 ntBASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Gm10033-202ENSMUST00000211874 928 ntBASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sh3rf1Q69ZI1 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sh3rf1Q69ZI1 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sh3rf1Q69ZI1 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.78■□□□□ 0.6
Sh3rf1Q69ZI1 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sh3rf1Q69ZI1 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Sh3rf1Q69ZI1 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Sh3rf1Q69ZI1 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.77■□□□□ 0.59
Sh3rf1Q69ZI1 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Sh3rf1Q69ZI1 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Gm9988-201ENSMUST00000069786 435 ntBASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Sh3rf1Q69ZI1 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms