Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.23■□□□□ 0.51
ABCA4P78363 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
ABCA4P78363 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.23■□□□□ 0.51
ABCA4P78363 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.23■□□□□ 0.51
ABCA4P78363 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.23■□□□□ 0.51
ABCA4P78363 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
ABCA4P78363 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.23■□□□□ 0.51
ABCA4P78363 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
ABCA4P78363 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
ABCA4P78363 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
ABCA4P78363 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ABCA4P78363 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
ABCA4P78363 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ABCA4P78363 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.22■□□□□ 0.51
ABCA4P78363 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
ABCA4P78363 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ABCA4P78363 AC093323.1-202ENST00000635031 2045 ntBASIC18.22■□□□□ 0.51
ABCA4P78363 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ABCA4P78363 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.21■□□□□ 0.51
ABCA4P78363 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.21■□□□□ 0.51
ABCA4P78363 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ABCA4P78363 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.21■□□□□ 0.51
ABCA4P78363 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ABCA4P78363 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ABCA4P78363 AL596275.1-201ENST00000423464 877 ntBASIC18.21■□□□□ 0.51
ABCA4P78363 AC008550.1-201ENST00000511500 884 ntBASIC18.21■□□□□ 0.51
ABCA4P78363 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.21■□□□□ 0.51
ABCA4P78363 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.21■□□□□ 0.51
ABCA4P78363 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ABCA4P78363 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
ABCA4P78363 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ABCA4P78363 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.2■□□□□ 0.5
ABCA4P78363 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.2■□□□□ 0.5
ABCA4P78363 AL158047.1-201ENST00000445918 881 ntBASIC18.2■□□□□ 0.5
ABCA4P78363 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.2■□□□□ 0.5
ABCA4P78363 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ABCA4P78363 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.2■□□□□ 0.5
ABCA4P78363 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ABCA4P78363 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.2■□□□□ 0.5
ABCA4P78363 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.2■□□□□ 0.5
ABCA4P78363 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ABCA4P78363 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ABCA4P78363 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.2■□□□□ 0.5
ABCA4P78363 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.2■□□□□ 0.5
ABCA4P78363 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.2■□□□□ 0.5
ABCA4P78363 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ABCA4P78363 AC092118.2-201ENST00000613495 667 ntBASIC18.2■□□□□ 0.5
ABCA4P78363 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.2■□□□□ 0.5
ABCA4P78363 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ABCA4P78363 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.19■□□□□ 0.5
ABCA4P78363 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.19■□□□□ 0.5
ABCA4P78363 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ABCA4P78363 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ABCA4P78363 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ABCA4P78363 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ABCA4P78363 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.19■□□□□ 0.5
ABCA4P78363 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ABCA4P78363 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.19■□□□□ 0.5
ABCA4P78363 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ABCA4P78363 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ABCA4P78363 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
ABCA4P78363 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.19■□□□□ 0.5
ABCA4P78363 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.19■□□□□ 0.5
ABCA4P78363 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.19■□□□□ 0.5
ABCA4P78363 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ABCA4P78363 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.19■□□□□ 0.5
ABCA4P78363 AC008175.2-201ENST00000612840 297 ntBASIC18.19■□□□□ 0.5
ABCA4P78363 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.19■□□□□ 0.5
ABCA4P78363 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
ABCA4P78363 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ABCA4P78363 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ABCA4P78363 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ABCA4P78363 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.18■□□□□ 0.5
ABCA4P78363 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ABCA4P78363 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.18■□□□□ 0.5
ABCA4P78363 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.18■□□□□ 0.5
ABCA4P78363 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ABCA4P78363 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ABCA4P78363 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.18■□□□□ 0.5
ABCA4P78363 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.18■□□□□ 0.5
ABCA4P78363 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.18■□□□□ 0.5
ABCA4P78363 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ABCA4P78363 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ABCA4P78363 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ABCA4P78363 AC069236.1-201ENST00000604339 616 ntBASIC18.18■□□□□ 0.5
ABCA4P78363 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ABCA4P78363 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ABCA4P78363 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.17■□□□□ 0.5
ABCA4P78363 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ABCA4P78363 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ABCA4P78363 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ABCA4P78363 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.17■□□□□ 0.5
ABCA4P78363 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ABCA4P78363 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.17■□□□□ 0.5
ABCA4P78363 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ABCA4P78363 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ABCA4P78363 AC139530.1-201ENST00000575312 1977 ntBASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 135.6 ms