Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm18671-201ENSMUST00000214826 683 ntBASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Sh3rf1Q69ZI1 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Sh3rf1Q69ZI1 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Sh3rf1Q69ZI1 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sh3rf1Q69ZI1 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Sh3rf1Q69ZI1 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Gm10849-201ENSMUST00000100397 618 ntBASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sh3rf1Q69ZI1 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sh3rf1Q69ZI1 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Sh3rf1Q69ZI1 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Gm37179-201ENSMUST00000194862 823 ntBASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Gm42778-201ENSMUST00000199644 553 ntBASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Spcs1-207ENSMUST00000228767 1008 ntBASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sh3rf1Q69ZI1 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sh3rf1Q69ZI1 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Sh3rf1Q69ZI1 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC18.83■□□□□ 0.61
Sh3rf1Q69ZI1 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.83■□□□□ 0.6
Sh3rf1Q69ZI1 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Sh3rf1Q69ZI1 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 129.7 ms