Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 AL136116.3-201ENST00000402907 1138 ntBASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 AC131281.2-201ENST00000520478 145 ntBASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 AL139246.5-201ENST00000606645 996 ntBASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.6■□□□□ 0.73
ZNF540Q8NDQ6 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 FP325331.1-202ENST00000623531 1380 ntBASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 CA15P2-201ENST00000611168 834 ntBASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF540Q8NDQ6 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF540Q8NDQ6 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.58■□□□□ 0.72
ZNF540Q8NDQ6 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF540Q8NDQ6 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF540Q8NDQ6 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF540Q8NDQ6 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF540Q8NDQ6 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF540Q8NDQ6 RNF165-205ENST00000588679 2904 ntBASIC19.58■□□□□ 0.72
ZNF540Q8NDQ6 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF540Q8NDQ6 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF540Q8NDQ6 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 MIR6722-201ENST00000617286 78 ntBASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.57■□□□□ 0.72
ZNF540Q8NDQ6 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.56■□□□□ 0.72
ZNF540Q8NDQ6 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms