Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.97■□□□□ 0.63
Sh3rf1Q69ZI1 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Sh3rf1Q69ZI1 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Gm27405-201ENSMUST00000184201 112 ntBASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sh3rf1Q69ZI1 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sh3rf1Q69ZI1 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sh3rf1Q69ZI1 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sh3rf1Q69ZI1 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Sh3rf1Q69ZI1 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Sh3rf1Q69ZI1 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sh3rf1Q69ZI1 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Sh3rf1Q69ZI1 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.94■□□□□ 0.62
Sh3rf1Q69ZI1 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.93■□□□□ 0.62
Sh3rf1Q69ZI1 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sh3rf1Q69ZI1 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sh3rf1Q69ZI1 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Gm11421-201ENSMUST00000122124 294 ntBASIC18.9■□□□□ 0.62
Sh3rf1Q69ZI1 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms