Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC19.24■□□□□ 0.67
Vps28Q9D1C8 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps28Q9D1C8 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Vps28Q9D1C8 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps28Q9D1C8 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Vps28Q9D1C8 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps28Q9D1C8 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps28Q9D1C8 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps28Q9D1C8 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps28Q9D1C8 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.23■□□□□ 0.67
Vps28Q9D1C8 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps28Q9D1C8 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.23■□□□□ 0.67
Vps28Q9D1C8 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps28Q9D1C8 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps28Q9D1C8 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Vps28Q9D1C8 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps28Q9D1C8 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps28Q9D1C8 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps28Q9D1C8 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps28Q9D1C8 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps28Q9D1C8 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps28Q9D1C8 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps28Q9D1C8 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Vps28Q9D1C8 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps28Q9D1C8 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vps28Q9D1C8 Gm6420-201ENSMUST00000193885 723 ntBASIC19.21■□□□□ 0.67
Vps28Q9D1C8 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.21■□□□□ 0.67
Vps28Q9D1C8 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps28Q9D1C8 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps28Q9D1C8 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps28Q9D1C8 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps28Q9D1C8 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Nespas-201ENSMUST00000143738 1083 ntBASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.2■□□□□ 0.66
Vps28Q9D1C8 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps28Q9D1C8 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps28Q9D1C8 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.19■□□□□ 0.66
Vps28Q9D1C8 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps28Q9D1C8 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps28Q9D1C8 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps28Q9D1C8 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps28Q9D1C8 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps28Q9D1C8 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps28Q9D1C8 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Vps28Q9D1C8 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.17■□□□□ 0.66
Vps28Q9D1C8 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps28Q9D1C8 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Gm12933-201ENSMUST00000120203 872 ntBASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.16■□□□□ 0.66
Vps28Q9D1C8 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Gm10602-201ENSMUST00000098239 609 ntBASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps28Q9D1C8 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms