Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF540Q8NDQ6 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF540Q8NDQ6 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF540Q8NDQ6 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF540Q8NDQ6 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF540Q8NDQ6 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF540Q8NDQ6 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
ZNF540Q8NDQ6 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF540Q8NDQ6 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 AL117332.1-201ENST00000622628 974 ntBASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 LINC01006-201ENST00000333319 2292 ntBASIC19.64■□□□□ 0.73
ZNF540Q8NDQ6 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF540Q8NDQ6 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF540Q8NDQ6 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF540Q8NDQ6 AC009086.3-201ENST00000623486 1008 ntBASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms