Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Sh3rf1Q69ZI1 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Sh3rf1Q69ZI1 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.04■□□□□ 0.64
Sh3rf1Q69ZI1 Gm7291-201ENSMUST00000199147 382 ntBASIC19.04■□□□□ 0.64
Sh3rf1Q69ZI1 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Sh3rf1Q69ZI1 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.04■□□□□ 0.64
Sh3rf1Q69ZI1 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 AA386476-201ENSMUST00000098781 1665 ntBASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Sh3rf1Q69ZI1 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Smad6-203ENSMUST00000179458 273 ntBASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Sh3rf1Q69ZI1 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Sh3rf1Q69ZI1 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Sh3rf1Q69ZI1 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Sh3rf1Q69ZI1 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Sh3rf1Q69ZI1 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Sh3rf1Q69ZI1 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Gm42642-201ENSMUST00000200683 355 ntBASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Sh3rf1Q69ZI1 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sh3rf1Q69ZI1 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Sh3rf1Q69ZI1 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.98■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 89.8 ms