Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vps28Q9D1C8 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.33■□□□□ 0.68
Vps28Q9D1C8 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vps28Q9D1C8 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vps28Q9D1C8 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vps28Q9D1C8 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vps28Q9D1C8 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vps28Q9D1C8 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vps28Q9D1C8 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vps28Q9D1C8 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Vps28Q9D1C8 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Vps28Q9D1C8 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Vps28Q9D1C8 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vps28Q9D1C8 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vps28Q9D1C8 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Vps28Q9D1C8 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vps28Q9D1C8 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vps28Q9D1C8 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Vps28Q9D1C8 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Vps28Q9D1C8 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
Vps28Q9D1C8 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps28Q9D1C8 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps28Q9D1C8 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps28Q9D1C8 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Vps28Q9D1C8 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vps28Q9D1C8 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
Vps28Q9D1C8 Gm45640-201ENSMUST00000210665 1896 ntBASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vps28Q9D1C8 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Vps28Q9D1C8 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps28Q9D1C8 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps28Q9D1C8 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.28■□□□□ 0.68
Vps28Q9D1C8 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps28Q9D1C8 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps28Q9D1C8 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Vps28Q9D1C8 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vps28Q9D1C8 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps28Q9D1C8 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps28Q9D1C8 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vps28Q9D1C8 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Vps28Q9D1C8 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Vps28Q9D1C8 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
Vps28Q9D1C8 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.27■□□□□ 0.68
Vps28Q9D1C8 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps28Q9D1C8 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps28Q9D1C8 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Vps28Q9D1C8 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Gm13534-201ENSMUST00000121169 513 ntBASIC19.26■□□□□ 0.67
Vps28Q9D1C8 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps28Q9D1C8 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps28Q9D1C8 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Gm29257-201ENSMUST00000186115 639 ntBASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps28Q9D1C8 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps28Q9D1C8 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Vps28Q9D1C8 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps28Q9D1C8 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps28Q9D1C8 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms