Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MIR6724-2-201ENST00000616483 92 ntBASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 MIR6724-4-201ENST00000617390 92 ntBASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 MIR6724-3-201ENST00000622482 92 ntBASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
ZNF540Q8NDQ6 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 AL356740.2-201ENST00000601559 647 ntBASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF540Q8NDQ6 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 LINC01529-204ENST00000636474 1715 ntBASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF540Q8NDQ6 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 AF131216.4-201ENST00000638924 1588 ntBASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF540Q8NDQ6 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF540Q8NDQ6 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 MIR3621-201ENST00000580529 85 ntBASIC19.66■□□□□ 0.74
ZNF540Q8NDQ6 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms