Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sh3rf1Q69ZI1 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Sh3rf1Q69ZI1 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sh3rf1Q69ZI1 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sh3rf1Q69ZI1 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sh3rf1Q69ZI1 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sh3rf1Q69ZI1 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Sh3rf1Q69ZI1 Gm10209-201ENSMUST00000203397 1607 ntBASIC19.11■□□□□ 0.65
Sh3rf1Q69ZI1 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Sh3rf1Q69ZI1 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Sh3rf1Q69ZI1 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Sh3rf1Q69ZI1 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Sh3rf1Q69ZI1 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
Sh3rf1Q69ZI1 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Sh3rf1Q69ZI1 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Sh3rf1Q69ZI1 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Sh3rf1Q69ZI1 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC19.08■□□□□ 0.65
Sh3rf1Q69ZI1 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Sh3rf1Q69ZI1 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
Sh3rf1Q69ZI1 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.08■□□□□ 0.65
Sh3rf1Q69ZI1 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Sh3rf1Q69ZI1 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Sh3rf1Q69ZI1 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Sh3rf1Q69ZI1 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Sh3rf1Q69ZI1 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Sh3rf1Q69ZI1 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Sh3rf1Q69ZI1 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.08■□□□□ 0.64
Sh3rf1Q69ZI1 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Sh3rf1Q69ZI1 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Sh3rf1Q69ZI1 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Sh3rf1Q69ZI1 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.08■□□□□ 0.64
Sh3rf1Q69ZI1 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Sh3rf1Q69ZI1 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Dmtn-210ENSMUST00000228824 2377 ntBASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Gm10493-201ENSMUST00000097270 612 ntBASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Sh3rf1Q69ZI1 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Gm26571-201ENSMUST00000181399 666 ntBASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Gm42569-201ENSMUST00000200539 472 ntBASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Sh3rf1Q69ZI1 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms