Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh3P13705 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh3P13705 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh3P13705 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.89■□□□□ 0.94
Msh3P13705 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Msh3P13705 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Msh3P13705 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Msh3P13705 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.89■□□□□ 0.93
Msh3P13705 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Msh3P13705 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Msh3P13705 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Msh3P13705 Gm9988-201ENSMUST00000069786 435 ntBASIC20.89■□□□□ 0.93
Msh3P13705 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Msh3P13705 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
Msh3P13705 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Msh3P13705 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.88■□□□□ 0.93
Msh3P13705 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.87■□□□□ 0.93
Msh3P13705 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.87■□□□□ 0.93
Msh3P13705 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.87■□□□□ 0.93
Msh3P13705 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Msh3P13705 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msh3P13705 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.86■□□□□ 0.93
Msh3P13705 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.86■□□□□ 0.93
Msh3P13705 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
Msh3P13705 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
Msh3P13705 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msh3P13705 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msh3P13705 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msh3P13705 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msh3P13705 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.85■□□□□ 0.93
Msh3P13705 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.85■□□□□ 0.93
Msh3P13705 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Msh3P13705 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.85■□□□□ 0.93
Msh3P13705 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Msh3P13705 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh3P13705 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.84■□□□□ 0.93
Msh3P13705 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.84■□□□□ 0.93
Msh3P13705 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh3P13705 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh3P13705 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Msh3P13705 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh3P13705 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Msh3P13705 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh3P13705 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh3P13705 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh3P13705 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh3P13705 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh3P13705 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Msh3P13705 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh3P13705 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.83■□□□□ 0.93
Msh3P13705 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh3P13705 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh3P13705 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh3P13705 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
Msh3P13705 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.83■□□□□ 0.93
Msh3P13705 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.83■□□□□ 0.93
Msh3P13705 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.83■□□□□ 0.93
Msh3P13705 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.83■□□□□ 0.93
Msh3P13705 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.83■□□□□ 0.93
Msh3P13705 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.83■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms