Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LRRC53A6NM62 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRRC53A6NM62 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.08■■□□□ 1.29
LRRC53A6NM62 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRRC53A6NM62 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
LRRC53A6NM62 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC23.07■■□□□ 1.28
LRRC53A6NM62 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
LRRC53A6NM62 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
LRRC53A6NM62 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.07■■□□□ 1.28
LRRC53A6NM62 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRRC53A6NM62 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.07■■□□□ 1.28
LRRC53A6NM62 AC136469.2-201ENST00000623944 1028 ntBASIC23.07■■□□□ 1.28
LRRC53A6NM62 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
LRRC53A6NM62 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRRC53A6NM62 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.06■■□□□ 1.28
LRRC53A6NM62 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 SLC47A1P1-202ENST00000449666 945 ntBASIC23.06■■□□□ 1.28
LRRC53A6NM62 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.06■■□□□ 1.28
LRRC53A6NM62 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.06■■□□□ 1.28
LRRC53A6NM62 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRC53A6NM62 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
LRRC53A6NM62 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.05■■□□□ 1.28
LRRC53A6NM62 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LRRC53A6NM62 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC23.05■■□□□ 1.28
LRRC53A6NM62 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.05■■□□□ 1.28
LRRC53A6NM62 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
LRRC53A6NM62 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.05■■□□□ 1.28
LRRC53A6NM62 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LRRC53A6NM62 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
LRRC53A6NM62 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
LRRC53A6NM62 AC131281.2-201ENST00000520478 145 ntBASIC23.05■■□□□ 1.28
LRRC53A6NM62 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.05■■□□□ 1.28
LRRC53A6NM62 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
LRRC53A6NM62 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LRRC53A6NM62 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
LRRC53A6NM62 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRC53A6NM62 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRC53A6NM62 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
LRRC53A6NM62 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
LRRC53A6NM62 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.04■■□□□ 1.28
LRRC53A6NM62 DUX4L19-201ENST00000557448 1267 ntBASIC23.04■■□□□ 1.28
LRRC53A6NM62 AC011298.3-201ENST00000615796 283 ntBASIC23.04■■□□□ 1.28
LRRC53A6NM62 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRC53A6NM62 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRC53A6NM62 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
LRRC53A6NM62 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRC53A6NM62 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRC53A6NM62 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.04■■□□□ 1.28
LRRC53A6NM62 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRC53A6NM62 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.04■■□□□ 1.28
LRRC53A6NM62 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC23.04■■□□□ 1.28
LRRC53A6NM62 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.03■■□□□ 1.28
LRRC53A6NM62 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRC53A6NM62 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRC53A6NM62 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRC53A6NM62 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
LRRC53A6NM62 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.03■■□□□ 1.28
LRRC53A6NM62 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
LRRC53A6NM62 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRC53A6NM62 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
LRRC53A6NM62 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
LRRC53A6NM62 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
LRRC53A6NM62 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRC53A6NM62 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRC53A6NM62 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
LRRC53A6NM62 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
LRRC53A6NM62 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
LRRC53A6NM62 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
LRRC53A6NM62 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
LRRC53A6NM62 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
LRRC53A6NM62 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.02■■□□□ 1.28
LRRC53A6NM62 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.02■■□□□ 1.28
LRRC53A6NM62 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
LRRC53A6NM62 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
LRRC53A6NM62 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.02■■□□□ 1.28
LRRC53A6NM62 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.27
LRRC53A6NM62 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LRRC53A6NM62 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LRRC53A6NM62 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LRRC53A6NM62 AP004607.7-201ENST00000527152 1677 ntBASIC23.01■■□□□ 1.27
LRRC53A6NM62 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
LRRC53A6NM62 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LRRC53A6NM62 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
LRRC53A6NM62 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23■■□□□ 1.27
LRRC53A6NM62 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
LRRC53A6NM62 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
LRRC53A6NM62 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
LRRC53A6NM62 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23■■□□□ 1.27
LRRC53A6NM62 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms