Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.78■□□□□ 0.76
ZNF540Q8NDQ6 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.77■□□□□ 0.76
ZNF540Q8NDQ6 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
ZNF540Q8NDQ6 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 MTDHP2-201ENST00000601468 714 ntBASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 AC010997.5-201ENST00000609182 354 ntBASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF540Q8NDQ6 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 FEM1AP4-201ENST00000443167 1987 ntBASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
ZNF540Q8NDQ6 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 AC004448.1-201ENST00000458332 883 ntBASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
ZNF540Q8NDQ6 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF540Q8NDQ6 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF540Q8NDQ6 MIR6724-1-201ENST00000616420 92 ntBASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms