Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Gm29257-201ENSMUST00000186115 639 ntBASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Sh3rf1Q69ZI1 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Sh3rf1Q69ZI1 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Gm45640-201ENSMUST00000210665 1896 ntBASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Gm40848-201ENSMUST00000221998 324 ntBASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 BC021767-201ENSMUST00000126387 1716 ntBASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Sh3rf1Q69ZI1 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Gm43060-201ENSMUST00000200621 289 ntBASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Sh3rf1Q69ZI1 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Sh3rf1Q69ZI1 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Sh3rf1Q69ZI1 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Sh3rf1Q69ZI1 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Grk6-206ENSMUST00000224995 2971 ntBASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Sh3rf1Q69ZI1 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 86.9 ms