Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh3P13705 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Msh3P13705 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Msh3P13705 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Msh3P13705 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msh3P13705 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msh3P13705 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Msh3P13705 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.97■□□□□ 0.95
Msh3P13705 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msh3P13705 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.97■□□□□ 0.95
Msh3P13705 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Msh3P13705 Rncr4-201ENSMUST00000194541 2234 ntBASIC20.97■□□□□ 0.95
Msh3P13705 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msh3P13705 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.96■□□□□ 0.95
Msh3P13705 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msh3P13705 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Msh3P13705 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Msh3P13705 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msh3P13705 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Msh3P13705 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msh3P13705 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Msh3P13705 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msh3P13705 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msh3P13705 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Msh3P13705 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Msh3P13705 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
Msh3P13705 Reep4-203ENSMUST00000226563 1444 ntBASIC20.95■□□□□ 0.95
Msh3P13705 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.95
Msh3P13705 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Msh3P13705 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Msh3P13705 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Msh3P13705 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Msh3P13705 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
Msh3P13705 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.95■□□□□ 0.94
Msh3P13705 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.95■□□□□ 0.94
Msh3P13705 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Msh3P13705 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Msh3P13705 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.95■□□□□ 0.94
Msh3P13705 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Msh3P13705 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Msh3P13705 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Msh3P13705 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.94■□□□□ 0.94
Msh3P13705 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh3P13705 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Msh3P13705 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.93■□□□□ 0.94
Msh3P13705 Golph3-205ENSMUST00000228671 2842 ntBASIC20.93■□□□□ 0.94
Msh3P13705 Gm13534-201ENSMUST00000121169 513 ntBASIC20.93■□□□□ 0.94
Msh3P13705 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Msh3P13705 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Msh3P13705 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Msh3P13705 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Msh3P13705 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
Msh3P13705 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Msh3P13705 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Msh3P13705 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Gm10493-201ENSMUST00000097270 612 ntBASIC20.92■□□□□ 0.94
Msh3P13705 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.92■□□□□ 0.94
Msh3P13705 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.92■□□□□ 0.94
Msh3P13705 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh3P13705 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.91■□□□□ 0.94
Msh3P13705 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh3P13705 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh3P13705 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh3P13705 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.9■□□□□ 0.94
Msh3P13705 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh3P13705 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh3P13705 Gm13234-201ENSMUST00000120010 747 ntBASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 114 ms