Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC126544.1-201ENST00000580842 1059 ntBASIC23.04■■□□□ 1.28
FOXN3O00409 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
FOXN3O00409 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.04■■□□□ 1.28
FOXN3O00409 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
FOXN3O00409 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
FOXN3O00409 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
FOXN3O00409 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
FOXN3O00409 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
FOXN3O00409 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
FOXN3O00409 AC026310.3-201ENST00000625186 2373 ntBASIC23.03■■□□□ 1.28
FOXN3O00409 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC23.03■■□□□ 1.28
FOXN3O00409 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
FOXN3O00409 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
FOXN3O00409 AC244015.2-201ENST00000616358 1861 ntBASIC23.02■■□□□ 1.28
FOXN3O00409 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.02■■□□□ 1.28
FOXN3O00409 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
FOXN3O00409 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
FOXN3O00409 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
FOXN3O00409 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
FOXN3O00409 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.02■■□□□ 1.28
FOXN3O00409 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23.02■■□□□ 1.28
FOXN3O00409 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.02■■□□□ 1.28
FOXN3O00409 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.02■■□□□ 1.28
FOXN3O00409 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
FOXN3O00409 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.02■■□□□ 1.28
FOXN3O00409 AL137060.1-201ENST00000618151 2648 ntBASIC23.01■■□□□ 1.27
FOXN3O00409 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
FOXN3O00409 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.01■■□□□ 1.27
FOXN3O00409 AP004607.7-201ENST00000527152 1677 ntBASIC23.01■■□□□ 1.27
FOXN3O00409 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
FOXN3O00409 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
FOXN3O00409 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
FOXN3O00409 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
FOXN3O00409 AC099791.1-201ENST00000416440 715 ntBASIC23.01■■□□□ 1.27
FOXN3O00409 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.01■■□□□ 1.27
FOXN3O00409 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.01■■□□□ 1.27
FOXN3O00409 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.01■■□□□ 1.27
FOXN3O00409 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
FOXN3O00409 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
FOXN3O00409 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.01■■□□□ 1.27
FOXN3O00409 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
FOXN3O00409 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
FOXN3O00409 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC23■■□□□ 1.27
FOXN3O00409 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
FOXN3O00409 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
FOXN3O00409 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC23■■□□□ 1.27
FOXN3O00409 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
FOXN3O00409 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23■■□□□ 1.27
FOXN3O00409 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23■■□□□ 1.27
FOXN3O00409 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23■■□□□ 1.27
FOXN3O00409 SMUG1P1-201ENST00000590640 811 ntBASIC23■■□□□ 1.27
FOXN3O00409 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
FOXN3O00409 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC23■■□□□ 1.27
FOXN3O00409 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23■■□□□ 1.27
FOXN3O00409 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
FOXN3O00409 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
FOXN3O00409 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
FOXN3O00409 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
FOXN3O00409 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
FOXN3O00409 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
FOXN3O00409 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
FOXN3O00409 EDA-201ENST00000338901 1233 ntBASIC22.99■■□□□ 1.27
FOXN3O00409 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
FOXN3O00409 IGHV3-19-201ENST00000521488 291 ntBASIC22.99■■□□□ 1.27
FOXN3O00409 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
FOXN3O00409 AL031432.3-201ENST00000607698 485 ntBASIC22.99■■□□□ 1.27
FOXN3O00409 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
FOXN3O00409 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
FOXN3O00409 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
FOXN3O00409 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
FOXN3O00409 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
FOXN3O00409 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
FOXN3O00409 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC22.98■■□□□ 1.27
FOXN3O00409 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
FOXN3O00409 AP001330.3-201ENST00000520123 633 ntBASIC22.98■■□□□ 1.27
FOXN3O00409 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.98■■□□□ 1.27
FOXN3O00409 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.98■■□□□ 1.27
FOXN3O00409 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
FOXN3O00409 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.98■■□□□ 1.27
FOXN3O00409 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.98■■□□□ 1.27
FOXN3O00409 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.98■■□□□ 1.27
FOXN3O00409 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.98■■□□□ 1.27
FOXN3O00409 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
FOXN3O00409 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
FOXN3O00409 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.98■■□□□ 1.27
FOXN3O00409 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
FOXN3O00409 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.97■■□□□ 1.27
FOXN3O00409 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
FOXN3O00409 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
FOXN3O00409 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
FOXN3O00409 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.97■■□□□ 1.27
FOXN3O00409 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.97■■□□□ 1.27
FOXN3O00409 AL355001.2-201ENST00000620617 1191 ntBASIC22.97■■□□□ 1.27
FOXN3O00409 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
FOXN3O00409 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
FOXN3O00409 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC22.97■■□□□ 1.27
FOXN3O00409 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
FOXN3O00409 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
FOXN3O00409 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.96■■□□□ 1.27
FOXN3O00409 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms