Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 AC080038.1-201ENST00000611274 1154 ntBASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 AC087239.1-201ENST00000622671 572 ntBASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA3Q9Y5H0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 AC016769.1-201ENST00000409132 1010 ntBASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 AC137761.2-201ENST00000561729 223 ntBASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 AC145350.3-201ENST00000569033 163 ntBASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA3Q9Y5H0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 AP004607.4-201ENST00000530158 1459 ntBASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 AC010141.3-201ENST00000456659 717 ntBASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA3Q9Y5H0 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.83■□□□□ 0.92
PCDHGA3Q9Y5H0 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHGA3Q9Y5H0 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.83■□□□□ 0.92
PCDHGA3Q9Y5H0 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHGA3Q9Y5H0 AC079630.1-202ENST00000618127 1840 ntBASIC20.83■□□□□ 0.92
PCDHGA3Q9Y5H0 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 AC004687.1-201ENST00000579003 1625 ntBASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA3Q9Y5H0 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 SMUG1P1-201ENST00000590640 811 ntBASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 RAP2CP1-201ENST00000605103 478 ntBASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHGA3Q9Y5H0 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA3Q9Y5H0 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PCDHGA3Q9Y5H0 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHGA3Q9Y5H0 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms