Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 UNC93B8-201ENST00000511903 705 ntBASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 MIR4281-201ENST00000580852 62 ntBASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 AL157384.1-201ENST00000445995 2473 ntBASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 AC144652.1-201ENST00000609974 1624 ntBASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 TSPY9P-201ENST00000440215 945 ntBASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 TSPY11P-201ENST00000442607 1045 ntBASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF540Q8NDQ6 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF540Q8NDQ6 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.83■□□□□ 0.77
ZNF540Q8NDQ6 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.83■□□□□ 0.77
ZNF540Q8NDQ6 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.83■□□□□ 0.77
ZNF540Q8NDQ6 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.83■□□□□ 0.77
ZNF540Q8NDQ6 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
ZNF540Q8NDQ6 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.83■□□□□ 0.77
ZNF540Q8NDQ6 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF540Q8NDQ6 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF540Q8NDQ6 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF540Q8NDQ6 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF540Q8NDQ6 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF540Q8NDQ6 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.82■□□□□ 0.76
ZNF540Q8NDQ6 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF540Q8NDQ6 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.82■□□□□ 0.76
ZNF540Q8NDQ6 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
ZNF540Q8NDQ6 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF540Q8NDQ6 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF540Q8NDQ6 AC019069.1-201ENST00000610008 1333 ntBASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 LINC01960-201ENST00000563759 1884 ntBASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 LINC01521-201ENST00000504184 1943 ntBASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF540Q8NDQ6 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 Z98882.1-201ENST00000622160 2253 ntBASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 AF106564.1-201ENST00000607058 2553 ntBASIC19.79■□□□□ 0.76
ZNF540Q8NDQ6 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms