Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Gm7160-202ENSMUST00000188519 1027 ntBASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf1Q69ZI1 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Gm6085-201ENSMUST00000182774 1470 ntBASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf1Q69ZI1 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.23■□□□□ 0.67
Sh3rf1Q69ZI1 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Spcs1-204ENSMUST00000226782 949 ntBASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC19.22■□□□□ 0.67
Sh3rf1Q69ZI1 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Gm26833-201ENSMUST00000180899 440 ntBASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Mir6236-201ENSMUST00000184437 123 ntBASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf1Q69ZI1 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf1Q69ZI1 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Sh3rf1Q69ZI1 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms