Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHGA3Q9Y5H0 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHGA3Q9Y5H0 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.93■□□□□ 0.94
PCDHGA3Q9Y5H0 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.93■□□□□ 0.94
PCDHGA3Q9Y5H0 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PCDHGA3Q9Y5H0 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHGA3Q9Y5H0 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PCDHGA3Q9Y5H0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.93■□□□□ 0.94
PCDHGA3Q9Y5H0 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PCDHGA3Q9Y5H0 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.92■□□□□ 0.94
PCDHGA3Q9Y5H0 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHGA3Q9Y5H0 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHGA3Q9Y5H0 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.91■□□□□ 0.94
PCDHGA3Q9Y5H0 AC006015.1-201ENST00000429970 570 ntBASIC20.91■□□□□ 0.94
PCDHGA3Q9Y5H0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHGA3Q9Y5H0 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.91■□□□□ 0.94
PCDHGA3Q9Y5H0 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHGA3Q9Y5H0 LINC00565-201ENST00000562710 2331 ntBASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
PCDHGA3Q9Y5H0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PCDHGA3Q9Y5H0 EP400NL-214ENST00000641289 2402 ntBASIC20.89■□□□□ 0.94
PCDHGA3Q9Y5H0 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.89■□□□□ 0.94
PCDHGA3Q9Y5H0 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.89■□□□□ 0.94
PCDHGA3Q9Y5H0 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA3Q9Y5H0 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA3Q9Y5H0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA3Q9Y5H0 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.89■□□□□ 0.93
PCDHGA3Q9Y5H0 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.89■□□□□ 0.93
PCDHGA3Q9Y5H0 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PCDHGA3Q9Y5H0 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA3Q9Y5H0 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA3Q9Y5H0 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA3Q9Y5H0 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 KRT18P61-201ENST00000585825 1298 ntBASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA3Q9Y5H0 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 BX005040.4-201ENST00000637145 1518 ntBASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
PCDHGA3Q9Y5H0 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 AC233723.2-201ENST00000623798 2106 ntBASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.86■□□□□ 0.93
PCDHGA3Q9Y5H0 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms