Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 AC021242.3-201ENST00000607598 1377 ntBASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 AC008406.3-201ENST00000620001 1374 ntBASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
ZNF540Q8NDQ6 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 KRT16P3-201ENST00000439127 1283 ntBASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.9■□□□□ 0.78
ZNF540Q8NDQ6 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF540Q8NDQ6 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF540Q8NDQ6 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.89■□□□□ 0.77
ZNF540Q8NDQ6 AC092667.1-201ENST00000434301 2586 ntBASIC19.89■□□□□ 0.77
ZNF540Q8NDQ6 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF540Q8NDQ6 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ZNF540Q8NDQ6 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
ZNF540Q8NDQ6 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ZNF540Q8NDQ6 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 AC092028.1-203ENST00000608262 953 ntBASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ZNF540Q8NDQ6 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.85■□□□□ 0.77
ZNF540Q8NDQ6 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms