Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Sh3rf1Q69ZI1 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
Sh3rf1Q69ZI1 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
Sh3rf1Q69ZI1 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Sh3rf1Q69ZI1 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.33■□□□□ 0.69
Sh3rf1Q69ZI1 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Sh3rf1Q69ZI1 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sh3rf1Q69ZI1 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sh3rf1Q69ZI1 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sh3rf1Q69ZI1 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sh3rf1Q69ZI1 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sh3rf1Q69ZI1 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sh3rf1Q69ZI1 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Sh3rf1Q69ZI1 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.33■□□□□ 0.68
Sh3rf1Q69ZI1 Rarb-207ENSMUST00000225921 2756 ntBASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Gm43173-201ENSMUST00000202246 593 ntBASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sh3rf1Q69ZI1 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sh3rf1Q69ZI1 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.31■□□□□ 0.68
Sh3rf1Q69ZI1 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sh3rf1Q69ZI1 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sh3rf1Q69ZI1 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Sh3rf1Q69ZI1 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sh3rf1Q69ZI1 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Sh3rf1Q69ZI1 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sh3rf1Q69ZI1 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Sh3rf1Q69ZI1 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.3■□□□□ 0.68
Sh3rf1Q69ZI1 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sh3rf1Q69ZI1 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Gm43530-201ENSMUST00000195920 274 ntBASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf1Q69ZI1 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 Gm5874-201ENSMUST00000096101 508 ntBASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sh3rf1Q69ZI1 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Sh3rf1Q69ZI1 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf1Q69ZI1 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms