Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
FOXN3O00409 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
FOXN3O00409 OR7E47P-201ENST00000546390 1422 ntBASIC23.19■■□□□ 1.3
FOXN3O00409 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
FOXN3O00409 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
FOXN3O00409 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.19■■□□□ 1.3
FOXN3O00409 AP005435.1-201ENST00000529293 1178 ntBASIC23.19■■□□□ 1.3
FOXN3O00409 MIR4767-201ENST00000582827 78 ntBASIC23.19■■□□□ 1.3
FOXN3O00409 AL136162.1-201ENST00000607711 1078 ntBASIC23.19■■□□□ 1.3
FOXN3O00409 AC087239.1-201ENST00000622671 572 ntBASIC23.19■■□□□ 1.3
FOXN3O00409 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
FOXN3O00409 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.19■■□□□ 1.3
FOXN3O00409 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
FOXN3O00409 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
FOXN3O00409 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
FOXN3O00409 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.18■■□□□ 1.3
FOXN3O00409 OXCT2P1-201ENST00000447263 1535 ntBASIC23.18■■□□□ 1.3
FOXN3O00409 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.18■■□□□ 1.3
FOXN3O00409 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
FOXN3O00409 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC23.18■■□□□ 1.3
FOXN3O00409 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC23.18■■□□□ 1.3
FOXN3O00409 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
FOXN3O00409 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
FOXN3O00409 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.18■■□□□ 1.3
FOXN3O00409 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
FOXN3O00409 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
FOXN3O00409 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.18■■□□□ 1.3
FOXN3O00409 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
FOXN3O00409 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
FOXN3O00409 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.17■■□□□ 1.3
FOXN3O00409 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
FOXN3O00409 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
FOXN3O00409 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.17■■□□□ 1.3
FOXN3O00409 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
FOXN3O00409 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
FOXN3O00409 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
FOXN3O00409 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
FOXN3O00409 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.17■■□□□ 1.3
FOXN3O00409 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.17■■□□□ 1.3
FOXN3O00409 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.17■■□□□ 1.3
FOXN3O00409 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.17■■□□□ 1.3
FOXN3O00409 AC007375.3-201ENST00000600936 2314 ntBASIC23.17■■□□□ 1.3
FOXN3O00409 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
FOXN3O00409 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.17■■□□□ 1.3
FOXN3O00409 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
FOXN3O00409 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.16■■□□□ 1.3
FOXN3O00409 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.16■■□□□ 1.3
FOXN3O00409 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
FOXN3O00409 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
FOXN3O00409 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
FOXN3O00409 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
FOXN3O00409 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.16■■□□□ 1.3
FOXN3O00409 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.16■■□□□ 1.3
FOXN3O00409 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
FOXN3O00409 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
FOXN3O00409 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
FOXN3O00409 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.15■■□□□ 1.3
FOXN3O00409 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.15■■□□□ 1.3
FOXN3O00409 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.15■■□□□ 1.3
FOXN3O00409 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
FOXN3O00409 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
FOXN3O00409 AC096631.2-201ENST00000436136 790 ntBASIC23.15■■□□□ 1.3
FOXN3O00409 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
FOXN3O00409 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
FOXN3O00409 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
FOXN3O00409 AC135279.3-201ENST00000610945 1311 ntBASIC23.14■■□□□ 1.3
FOXN3O00409 AC026471.6-201ENST00000622954 1905 ntBASIC23.14■■□□□ 1.3
FOXN3O00409 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
FOXN3O00409 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.14■■□□□ 1.3
FOXN3O00409 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
FOXN3O00409 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
FOXN3O00409 BX842568.3-201ENST00000418104 571 ntBASIC23.14■■□□□ 1.29
FOXN3O00409 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.14■■□□□ 1.29
FOXN3O00409 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
FOXN3O00409 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
FOXN3O00409 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
FOXN3O00409 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXN3O00409 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.13■■□□□ 1.29
FOXN3O00409 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXN3O00409 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXN3O00409 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXN3O00409 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.13■■□□□ 1.29
FOXN3O00409 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.13■■□□□ 1.29
FOXN3O00409 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
FOXN3O00409 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
FOXN3O00409 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.13■■□□□ 1.29
FOXN3O00409 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXN3O00409 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
FOXN3O00409 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
FOXN3O00409 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
FOXN3O00409 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
FOXN3O00409 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
FOXN3O00409 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
FOXN3O00409 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.12■■□□□ 1.29
FOXN3O00409 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.12■■□□□ 1.29
FOXN3O00409 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
FOXN3O00409 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.12■■□□□ 1.29
FOXN3O00409 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
FOXN3O00409 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
FOXN3O00409 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms