Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
NR2E3Q9Y5X4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.91■■■□□ 2.54
NR2E3Q9Y5X4 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.91■■■□□ 2.54
NR2E3Q9Y5X4 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.91■■■□□ 2.54
NR2E3Q9Y5X4 DUX4L29-201ENST00000425409 679 ntBASIC30.9■■■□□ 2.54
NR2E3Q9Y5X4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
NR2E3Q9Y5X4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.53
NR2E3Q9Y5X4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.84■■■□□ 2.53
NR2E3Q9Y5X4 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
NR2E3Q9Y5X4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.82■■■□□ 2.53
NR2E3Q9Y5X4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
NR2E3Q9Y5X4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.82■■■□□ 2.52
NR2E3Q9Y5X4 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.81■■■□□ 2.52
NR2E3Q9Y5X4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
NR2E3Q9Y5X4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.76■■■□□ 2.51
NR2E3Q9Y5X4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
NR2E3Q9Y5X4 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NR2E3Q9Y5X4 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NR2E3Q9Y5X4 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.74■■■□□ 2.51
NR2E3Q9Y5X4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.73■■■□□ 2.51
NR2E3Q9Y5X4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NR2E3Q9Y5X4 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.7■■■□□ 2.51
NR2E3Q9Y5X4 AC016575.1-201ENST00000607026 382 ntBASIC30.7■■■□□ 2.51
NR2E3Q9Y5X4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.69■■■□□ 2.5
NR2E3Q9Y5X4 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
NR2E3Q9Y5X4 MIR3648-2-201ENST00000581792 180 ntBASIC30.68■■■□□ 2.5
NR2E3Q9Y5X4 MIR3648-1-201ENST00000615959 180 ntBASIC30.68■■■□□ 2.5
NR2E3Q9Y5X4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.68■■■□□ 2.5
NR2E3Q9Y5X4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.67■■■□□ 2.5
NR2E3Q9Y5X4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.66■■■□□ 2.5
NR2E3Q9Y5X4 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
NR2E3Q9Y5X4 ABHD17AP3-201ENST00000503096 1137 ntBASIC30.65■■■□□ 2.5
NR2E3Q9Y5X4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.63■■■□□ 2.49
NR2E3Q9Y5X4 AC021231.2-201ENST00000594613 730 ntBASIC30.62■■■□□ 2.49
NR2E3Q9Y5X4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.6■■■□□ 2.49
NR2E3Q9Y5X4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
NR2E3Q9Y5X4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
NR2E3Q9Y5X4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
NR2E3Q9Y5X4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
NR2E3Q9Y5X4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC30.58■■■□□ 2.49
NR2E3Q9Y5X4 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NR2E3Q9Y5X4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.57■■■□□ 2.48
NR2E3Q9Y5X4 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC30.56■■■□□ 2.48
NR2E3Q9Y5X4 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
NR2E3Q9Y5X4 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.54■■■□□ 2.48
NR2E3Q9Y5X4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.54■■■□□ 2.48
NR2E3Q9Y5X4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.53■■■□□ 2.48
NR2E3Q9Y5X4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.51■■■□□ 2.47
NR2E3Q9Y5X4 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.51■■■□□ 2.47
NR2E3Q9Y5X4 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
NR2E3Q9Y5X4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.5■■■□□ 2.47
NR2E3Q9Y5X4 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC30.5■■■□□ 2.47
NR2E3Q9Y5X4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
NR2E3Q9Y5X4 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
NR2E3Q9Y5X4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
NR2E3Q9Y5X4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
NR2E3Q9Y5X4 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.46■■■□□ 2.47
NR2E3Q9Y5X4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
NR2E3Q9Y5X4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
NR2E3Q9Y5X4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
NR2E3Q9Y5X4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
NR2E3Q9Y5X4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
NR2E3Q9Y5X4 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
NR2E3Q9Y5X4 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
NR2E3Q9Y5X4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
NR2E3Q9Y5X4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
NR2E3Q9Y5X4 CR559946.2-201ENST00000623684 991 ntBASIC30.41■■■□□ 2.46
NR2E3Q9Y5X4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.41■■■□□ 2.46
NR2E3Q9Y5X4 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.4■■■□□ 2.46
NR2E3Q9Y5X4 DUX4L11-201ENST00000611504 1267 ntBASIC30.4■■■□□ 2.46
NR2E3Q9Y5X4 DUX4L12-201ENST00000614593 1267 ntBASIC30.4■■■□□ 2.46
NR2E3Q9Y5X4 DUX4L14-201ENST00000621227 1267 ntBASIC30.4■■■□□ 2.46
NR2E3Q9Y5X4 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
NR2E3Q9Y5X4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
NR2E3Q9Y5X4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
NR2E3Q9Y5X4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
NR2E3Q9Y5X4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
NR2E3Q9Y5X4 LINC01971-201ENST00000617888 1048 ntBASIC30.35■■■□□ 2.45
NR2E3Q9Y5X4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC30.33■■■□□ 2.45
NR2E3Q9Y5X4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC30.33■■■□□ 2.45
NR2E3Q9Y5X4 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC30.32■■■□□ 2.44
NR2E3Q9Y5X4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.32■■■□□ 2.44
NR2E3Q9Y5X4 WASH5P-204ENST00000632292 975 ntBASIC30.32■■■□□ 2.44
NR2E3Q9Y5X4 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
NR2E3Q9Y5X4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.3■■■□□ 2.44
NR2E3Q9Y5X4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
NR2E3Q9Y5X4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
NR2E3Q9Y5X4 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
NR2E3Q9Y5X4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
NR2E3Q9Y5X4 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NR2E3Q9Y5X4 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
NR2E3Q9Y5X4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.28■■■□□ 2.44
NR2E3Q9Y5X4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
NR2E3Q9Y5X4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.28■■■□□ 2.44
NR2E3Q9Y5X4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
NR2E3Q9Y5X4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NR2E3Q9Y5X4 AC108673.1-201ENST00000510422 1159 ntBASIC30.25■■■□□ 2.43
NR2E3Q9Y5X4 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC30.25■■■□□ 2.43
NR2E3Q9Y5X4 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NR2E3Q9Y5X4 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms