Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Col13a1Q9R1N9 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col13a1Q9R1N9 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col13a1Q9R1N9 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Col13a1Q9R1N9 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC21.61■■□□□ 1.05
Col13a1Q9R1N9 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col13a1Q9R1N9 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col13a1Q9R1N9 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.58■■□□□ 1.05
Col13a1Q9R1N9 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col13a1Q9R1N9 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col13a1Q9R1N9 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col13a1Q9R1N9 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.55■■□□□ 1.04
Col13a1Q9R1N9 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col13a1Q9R1N9 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21.51■■□□□ 1.03
Col13a1Q9R1N9 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Col13a1Q9R1N9 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col13a1Q9R1N9 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col13a1Q9R1N9 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col13a1Q9R1N9 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col13a1Q9R1N9 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col13a1Q9R1N9 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC21.47■■□□□ 1.03
Col13a1Q9R1N9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Col13a1Q9R1N9 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col13a1Q9R1N9 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC21.47■■□□□ 1.03
Col13a1Q9R1N9 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col13a1Q9R1N9 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col13a1Q9R1N9 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col13a1Q9R1N9 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col13a1Q9R1N9 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col13a1Q9R1N9 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC21.44■■□□□ 1.02
Col13a1Q9R1N9 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col13a1Q9R1N9 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
Col13a1Q9R1N9 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Col13a1Q9R1N9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col13a1Q9R1N9 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21.4■■□□□ 1.02
Col13a1Q9R1N9 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col13a1Q9R1N9 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Col13a1Q9R1N9 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.38■■□□□ 1.01
Col13a1Q9R1N9 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col13a1Q9R1N9 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col13a1Q9R1N9 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC21.36■■□□□ 1.01
Col13a1Q9R1N9 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col13a1Q9R1N9 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.34■■□□□ 1.01
Col13a1Q9R1N9 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col13a1Q9R1N9 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.33■■□□□ 1.01
Col13a1Q9R1N9 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Col13a1Q9R1N9 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.32■■□□□ 1
Col13a1Q9R1N9 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Col13a1Q9R1N9 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col13a1Q9R1N9 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col13a1Q9R1N9 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col13a1Q9R1N9 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col13a1Q9R1N9 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col13a1Q9R1N9 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col13a1Q9R1N9 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col13a1Q9R1N9 Gm42809-201ENSMUST00000198429 1138 ntBASIC21.28■■□□□ 1
Col13a1Q9R1N9 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
Col13a1Q9R1N9 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col13a1Q9R1N9 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col13a1Q9R1N9 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Col13a1Q9R1N9 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col13a1Q9R1N9 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col13a1Q9R1N9 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21.23■□□□□ 0.99
Col13a1Q9R1N9 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col13a1Q9R1N9 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21.22■□□□□ 0.99
Col13a1Q9R1N9 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col13a1Q9R1N9 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Col13a1Q9R1N9 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC21.2■□□□□ 0.98
Col13a1Q9R1N9 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Col13a1Q9R1N9 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col13a1Q9R1N9 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Col13a1Q9R1N9 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col13a1Q9R1N9 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col13a1Q9R1N9 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.18■□□□□ 0.98
Col13a1Q9R1N9 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col13a1Q9R1N9 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col13a1Q9R1N9 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col13a1Q9R1N9 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col13a1Q9R1N9 Gm7432-201ENSMUST00000210343 879 ntBASIC21.16■□□□□ 0.98
Col13a1Q9R1N9 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.15■□□□□ 0.98
Col13a1Q9R1N9 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21.14■□□□□ 0.97
Col13a1Q9R1N9 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Col13a1Q9R1N9 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col13a1Q9R1N9 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col13a1Q9R1N9 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col13a1Q9R1N9 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.11■□□□□ 0.97
Col13a1Q9R1N9 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col13a1Q9R1N9 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col13a1Q9R1N9 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC21.1■□□□□ 0.97
Col13a1Q9R1N9 Nkain2-201ENSMUST00000092602 558 ntBASIC21.1■□□□□ 0.97
Col13a1Q9R1N9 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col13a1Q9R1N9 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col13a1Q9R1N9 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col13a1Q9R1N9 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col13a1Q9R1N9 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col13a1Q9R1N9 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Col13a1Q9R1N9 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col13a1Q9R1N9 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Col13a1Q9R1N9 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col13a1Q9R1N9 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms