Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL21A1Q96P44 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL21A1Q96P44 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.52■■□□□ 1.68
COL21A1Q96P44 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.49■■□□□ 1.67
COL21A1Q96P44 RARRES2P7-201ENST00000567349 469 ntBASIC25.48■■□□□ 1.67
COL21A1Q96P44 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.46■■□□□ 1.67
COL21A1Q96P44 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.45■■□□□ 1.67
COL21A1Q96P44 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
COL21A1Q96P44 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL21A1Q96P44 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL21A1Q96P44 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.43■■□□□ 1.66
COL21A1Q96P44 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL21A1Q96P44 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL21A1Q96P44 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC25.42■■□□□ 1.66
COL21A1Q96P44 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL21A1Q96P44 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL21A1Q96P44 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
COL21A1Q96P44 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL21A1Q96P44 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL21A1Q96P44 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL21A1Q96P44 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
COL21A1Q96P44 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL21A1Q96P44 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL21A1Q96P44 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
COL21A1Q96P44 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.34■■□□□ 1.65
COL21A1Q96P44 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL21A1Q96P44 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL21A1Q96P44 SETD8P1-201ENST00000623146 1180 ntBASIC25.33■■□□□ 1.65
COL21A1Q96P44 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL21A1Q96P44 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL21A1Q96P44 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL21A1Q96P44 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL21A1Q96P44 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL21A1Q96P44 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL21A1Q96P44 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.3■■□□□ 1.64
COL21A1Q96P44 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
COL21A1Q96P44 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
COL21A1Q96P44 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
COL21A1Q96P44 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
COL21A1Q96P44 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
COL21A1Q96P44 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
COL21A1Q96P44 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
COL21A1Q96P44 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
COL21A1Q96P44 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
COL21A1Q96P44 AL133380.1-201ENST00000506013 324 ntBASIC25.25■■□□□ 1.63
COL21A1Q96P44 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
COL21A1Q96P44 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
COL21A1Q96P44 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.23■■□□□ 1.63
COL21A1Q96P44 ABCB10P1-201ENST00000614297 2181 ntBASIC25.21■■□□□ 1.63
COL21A1Q96P44 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL21A1Q96P44 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL21A1Q96P44 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.21■■□□□ 1.63
COL21A1Q96P44 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL21A1Q96P44 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
COL21A1Q96P44 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
COL21A1Q96P44 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL21A1Q96P44 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.19■■□□□ 1.62
COL21A1Q96P44 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL21A1Q96P44 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL21A1Q96P44 AC097358.2-201ENST00000607541 1159 ntBASIC25.18■■□□□ 1.62
COL21A1Q96P44 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
COL21A1Q96P44 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
COL21A1Q96P44 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL21A1Q96P44 AC136428.2-201ENST00000563187 214 ntBASIC25.14■■□□□ 1.62
COL21A1Q96P44 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.14■■□□□ 1.62
COL21A1Q96P44 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.13■■□□□ 1.61
COL21A1Q96P44 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC25.13■■□□□ 1.61
COL21A1Q96P44 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
COL21A1Q96P44 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL21A1Q96P44 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.12■■□□□ 1.61
COL21A1Q96P44 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
COL21A1Q96P44 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
COL21A1Q96P44 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
COL21A1Q96P44 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL21A1Q96P44 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.1■■□□□ 1.61
COL21A1Q96P44 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.09■■□□□ 1.61
COL21A1Q96P44 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
COL21A1Q96P44 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
COL21A1Q96P44 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC25.08■■□□□ 1.61
COL21A1Q96P44 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL21A1Q96P44 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.06■■□□□ 1.6
COL21A1Q96P44 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL21A1Q96P44 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
COL21A1Q96P44 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL21A1Q96P44 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
COL21A1Q96P44 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
COL21A1Q96P44 ABCB10P3-201ENST00000561950 2166 ntBASIC25.04■■□□□ 1.6
COL21A1Q96P44 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
COL21A1Q96P44 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
COL21A1Q96P44 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.03■■□□□ 1.6
COL21A1Q96P44 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL21A1Q96P44 AL161658.1-201ENST00000623641 1967 ntBASIC25.02■■□□□ 1.6
COL21A1Q96P44 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
COL21A1Q96P44 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC25.02■■□□□ 1.6
COL21A1Q96P44 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.02■■□□□ 1.6
COL21A1Q96P44 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC25.02■■□□□ 1.6
COL21A1Q96P44 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
COL21A1Q96P44 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
COL21A1Q96P44 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
COL21A1Q96P44 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms