Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Brf1Q8CFK2 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
Brf1Q8CFK2 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Brf1Q8CFK2 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Brf1Q8CFK2 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Brf1Q8CFK2 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC30.88■■■□□ 2.53
Brf1Q8CFK2 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Brf1Q8CFK2 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Brf1Q8CFK2 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Brf1Q8CFK2 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Brf1Q8CFK2 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Brf1Q8CFK2 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC30.85■■■□□ 2.53
Brf1Q8CFK2 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
Brf1Q8CFK2 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Brf1Q8CFK2 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC30.8■■■□□ 2.52
Brf1Q8CFK2 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Brf1Q8CFK2 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
Brf1Q8CFK2 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
Brf1Q8CFK2 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Brf1Q8CFK2 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Brf1Q8CFK2 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Brf1Q8CFK2 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Brf1Q8CFK2 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Brf1Q8CFK2 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Brf1Q8CFK2 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
Brf1Q8CFK2 Gm30346-201ENSMUST00000218641 1699 ntBASIC30.72■■■□□ 2.51
Brf1Q8CFK2 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
Brf1Q8CFK2 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC30.7■■■□□ 2.51
Brf1Q8CFK2 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC30.69■■■□□ 2.5
Brf1Q8CFK2 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Brf1Q8CFK2 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC30.67■■■□□ 2.5
Brf1Q8CFK2 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Brf1Q8CFK2 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Brf1Q8CFK2 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC30.65■■■□□ 2.5
Brf1Q8CFK2 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Brf1Q8CFK2 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
Brf1Q8CFK2 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Brf1Q8CFK2 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
Brf1Q8CFK2 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
Brf1Q8CFK2 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Brf1Q8CFK2 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
Brf1Q8CFK2 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Brf1Q8CFK2 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Brf1Q8CFK2 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Brf1Q8CFK2 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Brf1Q8CFK2 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Brf1Q8CFK2 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Brf1Q8CFK2 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
Brf1Q8CFK2 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Brf1Q8CFK2 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Brf1Q8CFK2 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
Brf1Q8CFK2 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
Brf1Q8CFK2 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC30.52■■■□□ 2.48
Brf1Q8CFK2 Zfp131-205ENSMUST00000223812 663 ntBASIC30.51■■■□□ 2.47
Brf1Q8CFK2 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Brf1Q8CFK2 Gm6345-201ENSMUST00000180378 1691 ntBASIC30.49■■■□□ 2.47
Brf1Q8CFK2 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Brf1Q8CFK2 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
Brf1Q8CFK2 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Brf1Q8CFK2 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Brf1Q8CFK2 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Brf1Q8CFK2 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Brf1Q8CFK2 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC30.44■■■□□ 2.46
Brf1Q8CFK2 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Brf1Q8CFK2 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Brf1Q8CFK2 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Brf1Q8CFK2 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Brf1Q8CFK2 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
Brf1Q8CFK2 Zxda-201ENSMUST00000117281 2621 ntBASIC30.4■■■□□ 2.46
Brf1Q8CFK2 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Brf1Q8CFK2 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Brf1Q8CFK2 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Brf1Q8CFK2 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Brf1Q8CFK2 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Brf1Q8CFK2 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.35■■■□□ 2.45
Brf1Q8CFK2 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
Brf1Q8CFK2 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Brf1Q8CFK2 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Brf1Q8CFK2 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Brf1Q8CFK2 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.31■■■□□ 2.44
Brf1Q8CFK2 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Brf1Q8CFK2 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Brf1Q8CFK2 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC30.3■■■□□ 2.44
Brf1Q8CFK2 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Brf1Q8CFK2 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Brf1Q8CFK2 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Brf1Q8CFK2 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
Brf1Q8CFK2 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
Brf1Q8CFK2 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
Brf1Q8CFK2 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Brf1Q8CFK2 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Brf1Q8CFK2 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
Brf1Q8CFK2 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Brf1Q8CFK2 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC30.24■■■□□ 2.43
Brf1Q8CFK2 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Brf1Q8CFK2 Gm6206-201ENSMUST00000133472 2199 ntBASIC30.23■■■□□ 2.43
Brf1Q8CFK2 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
Brf1Q8CFK2 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Brf1Q8CFK2 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
Brf1Q8CFK2 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.42
Retrieved 100 of 76,532 protein–RNA pairs in 699.9 ms