Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
Clrn3Q8BHH8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Clrn3Q8BHH8 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Clrn3Q8BHH8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Clrn3Q8BHH8 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC23.55■■□□□ 1.36
Clrn3Q8BHH8 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC23.55■■□□□ 1.36
Clrn3Q8BHH8 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Clrn3Q8BHH8 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC23.54■■□□□ 1.36
Clrn3Q8BHH8 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Clrn3Q8BHH8 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Clrn3Q8BHH8 Gm16148-201ENSMUST00000119653 893 ntBASIC23.54■■□□□ 1.36
Clrn3Q8BHH8 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Clrn3Q8BHH8 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Clrn3Q8BHH8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC23.53■■□□□ 1.36
Clrn3Q8BHH8 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
Clrn3Q8BHH8 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Clrn3Q8BHH8 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
Clrn3Q8BHH8 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Clrn3Q8BHH8 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Clrn3Q8BHH8 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Clrn3Q8BHH8 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC23.49■■□□□ 1.35
Clrn3Q8BHH8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Clrn3Q8BHH8 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC23.47■■□□□ 1.35
Clrn3Q8BHH8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Clrn3Q8BHH8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Clrn3Q8BHH8 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Clrn3Q8BHH8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Clrn3Q8BHH8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
Clrn3Q8BHH8 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Clrn3Q8BHH8 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Clrn3Q8BHH8 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Clrn3Q8BHH8 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
Clrn3Q8BHH8 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Clrn3Q8BHH8 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Clrn3Q8BHH8 Gm9905-201ENSMUST00000065740 1845 ntBASIC23.39■■□□□ 1.33
Clrn3Q8BHH8 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
Clrn3Q8BHH8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Clrn3Q8BHH8 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Clrn3Q8BHH8 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
Clrn3Q8BHH8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Clrn3Q8BHH8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Clrn3Q8BHH8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC23.36■■□□□ 1.33
Clrn3Q8BHH8 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Clrn3Q8BHH8 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Clrn3Q8BHH8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Clrn3Q8BHH8 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Clrn3Q8BHH8 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Clrn3Q8BHH8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Clrn3Q8BHH8 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Clrn3Q8BHH8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Clrn3Q8BHH8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Clrn3Q8BHH8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Clrn3Q8BHH8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Clrn3Q8BHH8 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Clrn3Q8BHH8 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Clrn3Q8BHH8 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Clrn3Q8BHH8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Clrn3Q8BHH8 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Clrn3Q8BHH8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
Clrn3Q8BHH8 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Clrn3Q8BHH8 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC23.25■■□□□ 1.31
Clrn3Q8BHH8 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Clrn3Q8BHH8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Clrn3Q8BHH8 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
Clrn3Q8BHH8 Gm30346-201ENSMUST00000218641 1699 ntBASIC23.23■■□□□ 1.31
Clrn3Q8BHH8 Gm6206-201ENSMUST00000133472 2199 ntBASIC23.22■■□□□ 1.31
Clrn3Q8BHH8 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
Clrn3Q8BHH8 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Clrn3Q8BHH8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Clrn3Q8BHH8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
Clrn3Q8BHH8 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Clrn3Q8BHH8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Clrn3Q8BHH8 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Clrn3Q8BHH8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.19■■□□□ 1.3
Clrn3Q8BHH8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Clrn3Q8BHH8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Clrn3Q8BHH8 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Clrn3Q8BHH8 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Clrn3Q8BHH8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC23.16■■□□□ 1.3
Clrn3Q8BHH8 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Clrn3Q8BHH8 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC23.15■■□□□ 1.3
Clrn3Q8BHH8 Gm6345-201ENSMUST00000180378 1691 ntBASIC23.15■■□□□ 1.3
Clrn3Q8BHH8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
Clrn3Q8BHH8 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Clrn3Q8BHH8 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Clrn3Q8BHH8 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Clrn3Q8BHH8 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Clrn3Q8BHH8 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Clrn3Q8BHH8 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Clrn3Q8BHH8 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Clrn3Q8BHH8 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
Clrn3Q8BHH8 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Clrn3Q8BHH8 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Clrn3Q8BHH8 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Clrn3Q8BHH8 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Clrn3Q8BHH8 Zfp131-205ENSMUST00000223812 663 ntBASIC23.09■■□□□ 1.29
Clrn3Q8BHH8 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Clrn3Q8BHH8 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Clrn3Q8BHH8 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC23.08■■□□□ 1.28
Clrn3Q8BHH8 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms