Protein–RNA interactions for Protein: Q6IEG0

SNRNP48, U11/U12 small nuclear ribonucleoprotein 48 kDa protein, humanhuman

Known RBP Predictions only

Length 339 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48Q6IEG0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.48■■■□□ 2.63
SNRNP48Q6IEG0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SNRNP48Q6IEG0 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SNRNP48Q6IEG0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
SNRNP48Q6IEG0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.45■■■□□ 2.63
SNRNP48Q6IEG0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.44■■■□□ 2.62
SNRNP48Q6IEG0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
SNRNP48Q6IEG0 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SNRNP48Q6IEG0 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
SNRNP48Q6IEG0 AC044849.2-201ENST00000606596 710 ntBASIC31.41■■■□□ 2.62
SNRNP48Q6IEG0 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SNRNP48Q6IEG0 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SNRNP48Q6IEG0 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SNRNP48Q6IEG0 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.38■■■□□ 2.61
SNRNP48Q6IEG0 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.34■■■□□ 2.61
SNRNP48Q6IEG0 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.33■■■□□ 2.61
SNRNP48Q6IEG0 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.33■■■□□ 2.61
SNRNP48Q6IEG0 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SNRNP48Q6IEG0 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.33■■■□□ 2.61
SNRNP48Q6IEG0 ABHD17AP4-201ENST00000411545 909 ntBASIC31.32■■■□□ 2.6
SNRNP48Q6IEG0 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.32■■■□□ 2.6
SNRNP48Q6IEG0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.32■■■□□ 2.6
SNRNP48Q6IEG0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SNRNP48Q6IEG0 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SNRNP48Q6IEG0 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
SNRNP48Q6IEG0 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SNRNP48Q6IEG0 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
SNRNP48Q6IEG0 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.29■■■□□ 2.6
SNRNP48Q6IEG0 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SNRNP48Q6IEG0 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SNRNP48Q6IEG0 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SNRNP48Q6IEG0 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
SNRNP48Q6IEG0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SNRNP48Q6IEG0 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SNRNP48Q6IEG0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.28■■■□□ 2.6
SNRNP48Q6IEG0 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
SNRNP48Q6IEG0 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SNRNP48Q6IEG0 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SNRNP48Q6IEG0 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SNRNP48Q6IEG0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
SNRNP48Q6IEG0 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SNRNP48Q6IEG0 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SNRNP48Q6IEG0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.24■■■□□ 2.59
SNRNP48Q6IEG0 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SNRNP48Q6IEG0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SNRNP48Q6IEG0 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SNRNP48Q6IEG0 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SNRNP48Q6IEG0 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.22■■■□□ 2.59
SNRNP48Q6IEG0 MIR7108-201ENST00000614319 87 ntBASIC31.22■■■□□ 2.59
SNRNP48Q6IEG0 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.21■■■□□ 2.59
SNRNP48Q6IEG0 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SNRNP48Q6IEG0 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SNRNP48Q6IEG0 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
SNRNP48Q6IEG0 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SNRNP48Q6IEG0 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
SNRNP48Q6IEG0 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SNRNP48Q6IEG0 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.18■■■□□ 2.58
SNRNP48Q6IEG0 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SNRNP48Q6IEG0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.17■■■□□ 2.58
SNRNP48Q6IEG0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
SNRNP48Q6IEG0 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.16■■■□□ 2.58
SNRNP48Q6IEG0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.16■■■□□ 2.58
SNRNP48Q6IEG0 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SNRNP48Q6IEG0 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SNRNP48Q6IEG0 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SNRNP48Q6IEG0 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.12■■■□□ 2.57
SNRNP48Q6IEG0 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
SNRNP48Q6IEG0 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
SNRNP48Q6IEG0 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.1■■■□□ 2.57
SNRNP48Q6IEG0 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.1■■■□□ 2.57
SNRNP48Q6IEG0 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.1■■■□□ 2.57
SNRNP48Q6IEG0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SNRNP48Q6IEG0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.09■■■□□ 2.57
SNRNP48Q6IEG0 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SNRNP48Q6IEG0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.08■■■□□ 2.57
SNRNP48Q6IEG0 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SNRNP48Q6IEG0 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.06■■■□□ 2.56
SNRNP48Q6IEG0 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.06■■■□□ 2.56
SNRNP48Q6IEG0 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SNRNP48Q6IEG0 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SNRNP48Q6IEG0 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SNRNP48Q6IEG0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.04■■■□□ 2.56
SNRNP48Q6IEG0 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.04■■■□□ 2.56
SNRNP48Q6IEG0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SNRNP48Q6IEG0 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
SNRNP48Q6IEG0 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SNRNP48Q6IEG0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.02■■■□□ 2.56
SNRNP48Q6IEG0 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.01■■■□□ 2.56
SNRNP48Q6IEG0 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31■■■□□ 2.55
SNRNP48Q6IEG0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SNRNP48Q6IEG0 ZNRF2P2-203ENST00000454624 420 ntBASIC31■■■□□ 2.55
SNRNP48Q6IEG0 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.99■■■□□ 2.55
SNRNP48Q6IEG0 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.98■■■□□ 2.55
SNRNP48Q6IEG0 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SNRNP48Q6IEG0 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SNRNP48Q6IEG0 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
SNRNP48Q6IEG0 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
SNRNP48Q6IEG0 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.95■■■□□ 2.55
SNRNP48Q6IEG0 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.94■■■□□ 2.54
SNRNP48Q6IEG0 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC30.94■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms