Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CX3CL1P78423 RARRES2P7-201ENST00000567349 469 ntBASIC21.72■■□□□ 1.07
CX3CL1P78423 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CX3CL1P78423 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CX3CL1P78423 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC21.72■■□□□ 1.07
CX3CL1P78423 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CX3CL1P78423 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC21.69■■□□□ 1.06
CX3CL1P78423 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.69■■□□□ 1.06
CX3CL1P78423 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CX3CL1P78423 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CX3CL1P78423 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CX3CL1P78423 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CX3CL1P78423 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CX3CL1P78423 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CX3CL1P78423 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CX3CL1P78423 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CX3CL1P78423 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CX3CL1P78423 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.63■■□□□ 1.05
CX3CL1P78423 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
CX3CL1P78423 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.62■■□□□ 1.05
CX3CL1P78423 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CX3CL1P78423 AL133380.1-201ENST00000506013 324 ntBASIC21.61■■□□□ 1.05
CX3CL1P78423 SETD8P1-201ENST00000623146 1180 ntBASIC21.61■■□□□ 1.05
CX3CL1P78423 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CX3CL1P78423 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CX3CL1P78423 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CX3CL1P78423 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CX3CL1P78423 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CX3CL1P78423 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CX3CL1P78423 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
CX3CL1P78423 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CX3CL1P78423 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CX3CL1P78423 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CX3CL1P78423 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CX3CL1P78423 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CX3CL1P78423 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CX3CL1P78423 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CX3CL1P78423 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CX3CL1P78423 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CX3CL1P78423 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CX3CL1P78423 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CX3CL1P78423 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CX3CL1P78423 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CX3CL1P78423 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CX3CL1P78423 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CX3CL1P78423 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.47■■□□□ 1.03
CX3CL1P78423 AC097358.2-201ENST00000607541 1159 ntBASIC21.47■■□□□ 1.03
CX3CL1P78423 WASH5P-204ENST00000632292 975 ntBASIC21.47■■□□□ 1.03
CX3CL1P78423 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CX3CL1P78423 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CX3CL1P78423 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.46■■□□□ 1.03
CX3CL1P78423 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CX3CL1P78423 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.45■■□□□ 1.02
CX3CL1P78423 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CX3CL1P78423 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
CX3CL1P78423 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CX3CL1P78423 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CX3CL1P78423 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CX3CL1P78423 AC136428.2-201ENST00000563187 214 ntBASIC21.42■■□□□ 1.02
CX3CL1P78423 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CX3CL1P78423 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CX3CL1P78423 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CX3CL1P78423 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.4■■□□□ 1.02
CX3CL1P78423 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.39■■□□□ 1.01
CX3CL1P78423 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
CX3CL1P78423 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.39■■□□□ 1.01
CX3CL1P78423 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CX3CL1P78423 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
CX3CL1P78423 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CX3CL1P78423 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.38■■□□□ 1.01
CX3CL1P78423 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CX3CL1P78423 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.38■■□□□ 1.01
CX3CL1P78423 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CX3CL1P78423 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CX3CL1P78423 AL161658.1-201ENST00000623641 1967 ntBASIC21.37■■□□□ 1.01
CX3CL1P78423 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CX3CL1P78423 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CX3CL1P78423 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
CX3CL1P78423 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CX3CL1P78423 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
CX3CL1P78423 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CX3CL1P78423 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CX3CL1P78423 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CX3CL1P78423 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CX3CL1P78423 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CX3CL1P78423 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CX3CL1P78423 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.35■■□□□ 1.01
CX3CL1P78423 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CX3CL1P78423 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CX3CL1P78423 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CX3CL1P78423 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CX3CL1P78423 CAHM-201ENST00000604200 896 ntBASIC21.34■■□□□ 1.01
CX3CL1P78423 AL391121.1-201ENST00000607967 1349 ntBASIC21.33■■□□□ 1.01
CX3CL1P78423 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CX3CL1P78423 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CX3CL1P78423 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.32■■□□□ 1
CX3CL1P78423 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.32■■□□□ 1
CX3CL1P78423 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.31■■□□□ 1
CX3CL1P78423 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.31■■□□□ 1
CX3CL1P78423 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms