Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Nkx2-1P50220 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Nkx2-1P50220 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Nkx2-1P50220 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Nkx2-1P50220 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Nkx2-1P50220 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Nkx2-1P50220 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
Nkx2-1P50220 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nkx2-1P50220 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nkx2-1P50220 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Nkx2-1P50220 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nkx2-1P50220 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx2-1P50220 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.68■□□□□ 0.9
Nkx2-1P50220 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nkx2-1P50220 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx2-1P50220 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx2-1P50220 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nkx2-1P50220 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.67■□□□□ 0.9
Nkx2-1P50220 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Nkx2-1P50220 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.64■□□□□ 0.89
Nkx2-1P50220 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nkx2-1P50220 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nkx2-1P50220 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx2-1P50220 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.62■□□□□ 0.89
Nkx2-1P50220 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nkx2-1P50220 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nkx2-1P50220 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nkx2-1P50220 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nkx2-1P50220 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nkx2-1P50220 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx2-1P50220 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.58■□□□□ 0.89
Nkx2-1P50220 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Nkx2-1P50220 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Nkx2-1P50220 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nkx2-1P50220 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.57■□□□□ 0.88
Nkx2-1P50220 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nkx2-1P50220 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx2-1P50220 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx2-1P50220 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx2-1P50220 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.55■□□□□ 0.88
Nkx2-1P50220 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nkx2-1P50220 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Nkx2-1P50220 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-1P50220 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-1P50220 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.53■□□□□ 0.88
Nkx2-1P50220 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nkx2-1P50220 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-1P50220 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-1P50220 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-1P50220 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-1P50220 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Nkx2-1P50220 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-1P50220 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-1P50220 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-1P50220 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nkx2-1P50220 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx2-1P50220 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx2-1P50220 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Nkx2-1P50220 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Nkx2-1P50220 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nkx2-1P50220 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nkx2-1P50220 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Nkx2-1P50220 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx2-1P50220 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.87
Nkx2-1P50220 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-1P50220 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-1P50220 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-1P50220 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx2-1P50220 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx2-1P50220 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx2-1P50220 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx2-1P50220 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Nkx2-1P50220 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Nkx2-1P50220 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.42■□□□□ 0.86
Nkx2-1P50220 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.42■□□□□ 0.86
Nkx2-1P50220 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC20.42■□□□□ 0.86
Nkx2-1P50220 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nkx2-1P50220 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Nkx2-1P50220 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nkx2-1P50220 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Nkx2-1P50220 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Nkx2-1P50220 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Nkx2-1P50220 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nkx2-1P50220 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nkx2-1P50220 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nkx2-1P50220 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nkx2-1P50220 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nkx2-1P50220 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nkx2-1P50220 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Nkx2-1P50220 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nkx2-1P50220 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nkx2-1P50220 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nkx2-1P50220 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Nkx2-1P50220 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.35■□□□□ 0.85
Nkx2-1P50220 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nkx2-1P50220 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.34■□□□□ 0.85
Nkx2-1P50220 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Nkx2-1P50220 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Nkx2-1P50220 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
Nkx2-1P50220 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC20.33■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms