Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DMBP28068 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DMBP28068 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
HLA-DMBP28068 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HLA-DMBP28068 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DMBP28068 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
HLA-DMBP28068 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DMBP28068 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
HLA-DMBP28068 EBPL-203ENST00000378270 579 ntTSL 2 BASIC20.55■□□□□ 0.88
HLA-DMBP28068 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DMBP28068 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HLA-DMBP28068 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HLA-DMBP28068 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DMBP28068 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DMBP28068 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DMBP28068 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC20.5■□□□□ 0.87
HLA-DMBP28068 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DMBP28068 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.5■□□□□ 0.87
HLA-DMBP28068 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
HLA-DMBP28068 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC20.49■□□□□ 0.87
HLA-DMBP28068 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DMBP28068 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DMBP28068 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DMBP28068 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HLA-DMBP28068 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC20.46■□□□□ 0.87
HLA-DMBP28068 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.45■□□□□ 0.86
HLA-DMBP28068 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DMBP28068 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.45■□□□□ 0.86
HLA-DMBP28068 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DMBP28068 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DMBP28068 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DMBP28068 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
HLA-DMBP28068 AL161658.1-201ENST00000623641 1967 ntBASIC20.41■□□□□ 0.86
HLA-DMBP28068 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
HLA-DMBP28068 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DMBP28068 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
HLA-DMBP28068 ABCB10P3-201ENST00000561950 2166 ntBASIC20.4■□□□□ 0.86
HLA-DMBP28068 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
HLA-DMBP28068 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DMBP28068 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DMBP28068 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC20.38■□□□□ 0.85
HLA-DMBP28068 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC20.38■□□□□ 0.85
HLA-DMBP28068 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DMBP28068 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DMBP28068 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DMBP28068 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DMBP28068 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
HLA-DMBP28068 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DMBP28068 AC139426.1-201ENST00000568218 2529 ntBASIC20.36■□□□□ 0.85
HLA-DMBP28068 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
HLA-DMBP28068 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HLA-DMBP28068 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DMBP28068 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DMBP28068 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DMBP28068 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC20.35■□□□□ 0.85
HLA-DMBP28068 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DMBP28068 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DMBP28068 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DMBP28068 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.34■□□□□ 0.85
HLA-DMBP28068 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DMBP28068 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
HLA-DMBP28068 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DMBP28068 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DMBP28068 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DMBP28068 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HLA-DMBP28068 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.3■□□□□ 0.84
HLA-DMBP28068 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DMBP28068 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.29■□□□□ 0.84
HLA-DMBP28068 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DMBP28068 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DMBP28068 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DMBP28068 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.28■□□□□ 0.84
HLA-DMBP28068 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC20.28■□□□□ 0.84
HLA-DMBP28068 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DMBP28068 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DMBP28068 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DMBP28068 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DMBP28068 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DMBP28068 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.83
HLA-DMBP28068 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 ST7-AS1-201ENST00000456775 1889 ntBASIC20.25■□□□□ 0.83
HLA-DMBP28068 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC20.25■□□□□ 0.83
HLA-DMBP28068 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DMBP28068 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
HLA-DMBP28068 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DMBP28068 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DMBP28068 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DMBP28068 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DMBP28068 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DMBP28068 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DMBP28068 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms