Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hoxd3P09027 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Hoxd3P09027 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Hoxd3P09027 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC19.68■□□□□ 0.74
Hoxd3P09027 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hoxd3P09027 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Hoxd3P09027 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hoxd3P09027 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC19.68■□□□□ 0.74
Hoxd3P09027 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxd3P09027 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Hoxd3P09027 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Hoxd3P09027 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxd3P09027 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxd3P09027 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC19.66■□□□□ 0.74
Hoxd3P09027 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hoxd3P09027 Gm6658-202ENSMUST00000209493 1885 ntBASIC19.66■□□□□ 0.74
Hoxd3P09027 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxd3P09027 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hoxd3P09027 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC19.65■□□□□ 0.74
Hoxd3P09027 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Hoxd3P09027 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC19.64■□□□□ 0.73
Hoxd3P09027 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Hoxd3P09027 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxd3P09027 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxd3P09027 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxd3P09027 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC19.63■□□□□ 0.73
Hoxd3P09027 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxd3P09027 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Hoxd3P09027 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC19.62■□□□□ 0.73
Hoxd3P09027 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Hoxd3P09027 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxd3P09027 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hoxd3P09027 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Hoxd3P09027 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Hoxd3P09027 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Hoxd3P09027 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Hoxd3P09027 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Hoxd3P09027 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC19.57■□□□□ 0.72
Hoxd3P09027 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hoxd3P09027 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.55■□□□□ 0.72
Hoxd3P09027 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hoxd3P09027 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hoxd3P09027 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Hoxd3P09027 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC19.53■□□□□ 0.72
Hoxd3P09027 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Hoxd3P09027 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
Hoxd3P09027 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC19.52■□□□□ 0.72
Hoxd3P09027 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hoxd3P09027 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hoxd3P09027 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Hoxd3P09027 Gm24970-201ENSMUST00000175582 82 ntBASIC19.51■□□□□ 0.71
Hoxd3P09027 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC19.51■□□□□ 0.71
Hoxd3P09027 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC19.51■□□□□ 0.71
Hoxd3P09027 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hoxd3P09027 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Hoxd3P09027 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hoxd3P09027 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Hoxd3P09027 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hoxd3P09027 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Hoxd3P09027 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hoxd3P09027 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hoxd3P09027 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Hoxd3P09027 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hoxd3P09027 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Hoxd3P09027 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hoxd3P09027 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hoxd3P09027 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
Hoxd3P09027 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hoxd3P09027 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Hoxd3P09027 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Hoxd3P09027 Gm30346-201ENSMUST00000218641 1699 ntBASIC19.43■□□□□ 0.7
Hoxd3P09027 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hoxd3P09027 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hoxd3P09027 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hoxd3P09027 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Hoxd3P09027 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hoxd3P09027 Gm43863-201ENSMUST00000203822 1192 ntBASIC19.41■□□□□ 0.7
Hoxd3P09027 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hoxd3P09027 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hoxd3P09027 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC19.38■□□□□ 0.69
Hoxd3P09027 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hoxd3P09027 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC19.37■□□□□ 0.69
Hoxd3P09027 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Hoxd3P09027 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC19.36■□□□□ 0.69
Hoxd3P09027 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hoxd3P09027 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Hoxd3P09027 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hoxd3P09027 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Hoxd3P09027 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Hoxd3P09027 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hoxd3P09027 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hoxd3P09027 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Hoxd3P09027 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC19.32■□□□□ 0.68
Hoxd3P09027 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Hoxd3P09027 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Hoxd3P09027 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hoxd3P09027 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hoxd3P09027 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hoxd3P09027 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Hoxd3P09027 AC157572.2-201ENSMUST00000226970 908 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms