Protein–RNA interactions for Protein: P09022

Hoxa1, Homeobox protein Hox-A1, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa1P09022 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Hoxa1P09022 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hoxa1P09022 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hoxa1P09022 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Hoxa1P09022 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Hoxa1P09022 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hoxa1P09022 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hoxa1P09022 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hoxa1P09022 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC20.37■□□□□ 0.85
Hoxa1P09022 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hoxa1P09022 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
Hoxa1P09022 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hoxa1P09022 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Hoxa1P09022 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.34■□□□□ 0.85
Hoxa1P09022 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hoxa1P09022 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hoxa1P09022 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Hoxa1P09022 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
Hoxa1P09022 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Hoxa1P09022 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC20.31■□□□□ 0.84
Hoxa1P09022 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Hoxa1P09022 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Hoxa1P09022 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hoxa1P09022 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC20.29■□□□□ 0.84
Hoxa1P09022 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.29■□□□□ 0.84
Hoxa1P09022 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Hoxa1P09022 Peli2-204ENSMUST00000226513 1320 ntBASIC20.27■□□□□ 0.84
Hoxa1P09022 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hoxa1P09022 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Hoxa1P09022 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hoxa1P09022 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Hoxa1P09022 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.26■□□□□ 0.83
Hoxa1P09022 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Hoxa1P09022 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Hoxa1P09022 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hoxa1P09022 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Hoxa1P09022 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hoxa1P09022 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hoxa1P09022 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.22■□□□□ 0.83
Hoxa1P09022 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hoxa1P09022 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hoxa1P09022 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Hoxa1P09022 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hoxa1P09022 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hoxa1P09022 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hoxa1P09022 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hoxa1P09022 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Hoxa1P09022 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Hoxa1P09022 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Hoxa1P09022 Gm30346-201ENSMUST00000218641 1699 ntBASIC20.18■□□□□ 0.82
Hoxa1P09022 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hoxa1P09022 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Hoxa1P09022 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.17■□□□□ 0.82
Hoxa1P09022 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hoxa1P09022 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hoxa1P09022 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Hoxa1P09022 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Hoxa1P09022 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC20.14■□□□□ 0.81
Hoxa1P09022 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hoxa1P09022 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Hoxa1P09022 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hoxa1P09022 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hoxa1P09022 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hoxa1P09022 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Hoxa1P09022 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Hoxa1P09022 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Hoxa1P09022 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Hoxa1P09022 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Hoxa1P09022 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC20.09■□□□□ 0.81
Hoxa1P09022 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Hoxa1P09022 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Hoxa1P09022 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hoxa1P09022 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Hoxa1P09022 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Hoxa1P09022 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Hoxa1P09022 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Hoxa1P09022 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hoxa1P09022 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hoxa1P09022 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Hoxa1P09022 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Hoxa1P09022 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hoxa1P09022 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Hoxa1P09022 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Hoxa1P09022 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Hoxa1P09022 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Hoxa1P09022 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hoxa1P09022 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hoxa1P09022 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Hoxa1P09022 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hoxa1P09022 Gm24804-201ENSMUST00000174982 85 ntBASIC20.02■□□□□ 0.8
Hoxa1P09022 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Hoxa1P09022 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Hoxa1P09022 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Hoxa1P09022 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Hoxa1P09022 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hoxa1P09022 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Hoxa1P09022 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20■□□□□ 0.79
Hoxa1P09022 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Hoxa1P09022 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Hoxa1P09022 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 8.4 ms