Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
Trav11A0A0B4J1J9 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav11A0A0B4J1J9 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trav11A0A0B4J1J9 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav11A0A0B4J1J9 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav11A0A0B4J1J9 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav11A0A0B4J1J9 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav11A0A0B4J1J9 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav11A0A0B4J1J9 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav11A0A0B4J1J9 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav11A0A0B4J1J9 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav11A0A0B4J1J9 Amer2-203ENSMUST00000225247 2662 ntBASIC17.14■□□□□ 0.34
Trav11A0A0B4J1J9 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav11A0A0B4J1J9 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav11A0A0B4J1J9 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav11A0A0B4J1J9 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
Trav11A0A0B4J1J9 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav11A0A0B4J1J9 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav11A0A0B4J1J9 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav11A0A0B4J1J9 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trav11A0A0B4J1J9 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav11A0A0B4J1J9 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav11A0A0B4J1J9 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trav11A0A0B4J1J9 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav11A0A0B4J1J9 Gm6345-201ENSMUST00000180378 1691 ntBASIC17.05■□□□□ 0.32
Trav11A0A0B4J1J9 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav11A0A0B4J1J9 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trav11A0A0B4J1J9 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Trav11A0A0B4J1J9 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav11A0A0B4J1J9 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trav11A0A0B4J1J9 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav11A0A0B4J1J9 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav11A0A0B4J1J9 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav11A0A0B4J1J9 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
Trav11A0A0B4J1J9 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC17.01■□□□□ 0.31
Trav11A0A0B4J1J9 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav11A0A0B4J1J9 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav11A0A0B4J1J9 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav11A0A0B4J1J9 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav11A0A0B4J1J9 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav11A0A0B4J1J9 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav11A0A0B4J1J9 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trav11A0A0B4J1J9 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trav11A0A0B4J1J9 Gm25262-201ENSMUST00000174934 133 ntBASIC16.99■□□□□ 0.31
Trav11A0A0B4J1J9 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav11A0A0B4J1J9 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav11A0A0B4J1J9 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav11A0A0B4J1J9 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trav11A0A0B4J1J9 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Trav11A0A0B4J1J9 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav11A0A0B4J1J9 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Trav11A0A0B4J1J9 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trav11A0A0B4J1J9 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC16.95■□□□□ 0.3
Trav11A0A0B4J1J9 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trav11A0A0B4J1J9 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC16.94■□□□□ 0.3
Trav11A0A0B4J1J9 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Trav11A0A0B4J1J9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC16.94■□□□□ 0.3
Trav11A0A0B4J1J9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav11A0A0B4J1J9 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC16.94■□□□□ 0.3
Trav11A0A0B4J1J9 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav11A0A0B4J1J9 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trav11A0A0B4J1J9 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Trav11A0A0B4J1J9 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav11A0A0B4J1J9 Fezf2-202ENSMUST00000224023 1917 ntBASIC16.93■□□□□ 0.3
Trav11A0A0B4J1J9 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC16.92■□□□□ 0.3
Trav11A0A0B4J1J9 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trav11A0A0B4J1J9 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav11A0A0B4J1J9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trav11A0A0B4J1J9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trav11A0A0B4J1J9 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trav11A0A0B4J1J9 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trav11A0A0B4J1J9 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trav11A0A0B4J1J9 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav11A0A0B4J1J9 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC16.89■□□□□ 0.29
Trav11A0A0B4J1J9 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav11A0A0B4J1J9 AC166822.3-201ENSMUST00000227394 661 ntBASIC16.89■□□□□ 0.29
Trav11A0A0B4J1J9 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav11A0A0B4J1J9 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC16.89■□□□□ 0.29
Trav11A0A0B4J1J9 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Trav11A0A0B4J1J9 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav11A0A0B4J1J9 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav11A0A0B4J1J9 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC16.88■□□□□ 0.29
Trav11A0A0B4J1J9 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trav11A0A0B4J1J9 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trav11A0A0B4J1J9 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trav11A0A0B4J1J9 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Trav11A0A0B4J1J9 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Trav11A0A0B4J1J9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC16.87■□□□□ 0.29
Trav11A0A0B4J1J9 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trav11A0A0B4J1J9 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
Trav11A0A0B4J1J9 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trav11A0A0B4J1J9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Trav11A0A0B4J1J9 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trav11A0A0B4J1J9 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trav11A0A0B4J1J9 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trav11A0A0B4J1J9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trav11A0A0B4J1J9 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trav11A0A0B4J1J9 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
Trav11A0A0B4J1J9 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trav11A0A0B4J1J9 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms