Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trbv3A0A0A6YYE2 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Trbv3A0A0A6YYE2 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trbv3A0A0A6YYE2 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trbv3A0A0A6YYE2 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Trbv3A0A0A6YYE2 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv3A0A0A6YYE2 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC19.5■□□□□ 0.71
Trbv3A0A0A6YYE2 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv3A0A0A6YYE2 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv3A0A0A6YYE2 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trbv3A0A0A6YYE2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC19.49■□□□□ 0.71
Trbv3A0A0A6YYE2 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC19.49■□□□□ 0.71
Trbv3A0A0A6YYE2 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Trbv3A0A0A6YYE2 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trbv3A0A0A6YYE2 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trbv3A0A0A6YYE2 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trbv3A0A0A6YYE2 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trbv3A0A0A6YYE2 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trbv3A0A0A6YYE2 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trbv3A0A0A6YYE2 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trbv3A0A0A6YYE2 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trbv3A0A0A6YYE2 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC19.44■□□□□ 0.7
Trbv3A0A0A6YYE2 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv3A0A0A6YYE2 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv3A0A0A6YYE2 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv3A0A0A6YYE2 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv3A0A0A6YYE2 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trbv3A0A0A6YYE2 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.4■□□□□ 0.7
Trbv3A0A0A6YYE2 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trbv3A0A0A6YYE2 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Trbv3A0A0A6YYE2 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Trbv3A0A0A6YYE2 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Trbv3A0A0A6YYE2 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trbv3A0A0A6YYE2 Rab21-202ENSMUST00000218831 843 ntBASIC19.38■□□□□ 0.69
Trbv3A0A0A6YYE2 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trbv3A0A0A6YYE2 AL845457.1-201ENSMUST00000197244 68 ntBASIC19.37■□□□□ 0.69
Trbv3A0A0A6YYE2 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trbv3A0A0A6YYE2 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trbv3A0A0A6YYE2 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trbv3A0A0A6YYE2 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC19.36■□□□□ 0.69
Trbv3A0A0A6YYE2 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trbv3A0A0A6YYE2 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trbv3A0A0A6YYE2 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Trbv3A0A0A6YYE2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
Trbv3A0A0A6YYE2 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv3A0A0A6YYE2 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv3A0A0A6YYE2 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trbv3A0A0A6YYE2 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC19.33■□□□□ 0.68
Trbv3A0A0A6YYE2 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv3A0A0A6YYE2 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trbv3A0A0A6YYE2 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trbv3A0A0A6YYE2 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv3A0A0A6YYE2 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv3A0A0A6YYE2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Trbv3A0A0A6YYE2 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv3A0A0A6YYE2 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trbv3A0A0A6YYE2 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.29■□□□□ 0.68
Trbv3A0A0A6YYE2 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trbv3A0A0A6YYE2 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trbv3A0A0A6YYE2 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Trbv3A0A0A6YYE2 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trbv3A0A0A6YYE2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trbv3A0A0A6YYE2 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trbv3A0A0A6YYE2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC19.27■□□□□ 0.68
Trbv3A0A0A6YYE2 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trbv3A0A0A6YYE2 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trbv3A0A0A6YYE2 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trbv3A0A0A6YYE2 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv3A0A0A6YYE2 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv3A0A0A6YYE2 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Trbv3A0A0A6YYE2 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trbv3A0A0A6YYE2 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trbv3A0A0A6YYE2 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trbv3A0A0A6YYE2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trbv3A0A0A6YYE2 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv3A0A0A6YYE2 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Trbv3A0A0A6YYE2 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv3A0A0A6YYE2 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv3A0A0A6YYE2 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv3A0A0A6YYE2 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv3A0A0A6YYE2 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.19■□□□□ 0.66
Trbv3A0A0A6YYE2 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv3A0A0A6YYE2 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv3A0A0A6YYE2 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv3A0A0A6YYE2 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv3A0A0A6YYE2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC19.17■□□□□ 0.66
Trbv3A0A0A6YYE2 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trbv3A0A0A6YYE2 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Trbv3A0A0A6YYE2 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trbv3A0A0A6YYE2 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trbv3A0A0A6YYE2 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv3A0A0A6YYE2 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv3A0A0A6YYE2 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv3A0A0A6YYE2 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv3A0A0A6YYE2 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv3A0A0A6YYE2 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv3A0A0A6YYE2 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv3A0A0A6YYE2 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv3A0A0A6YYE2 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv3A0A0A6YYE2 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms