Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 AC137630.3-201ENST00000607245 391 ntBASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF540Q8NDQ6 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
ZNF540Q8NDQ6 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 AC120024.1-201ENST00000562672 995 ntBASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
ZNF540Q8NDQ6 AL121603.2-201ENST00000557373 2117 ntBASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.96■□□□□ 0.79
ZNF540Q8NDQ6 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.95■□□□□ 0.79
ZNF540Q8NDQ6 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ZNF540Q8NDQ6 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 AC011551.1-201ENST00000614101 683 ntBASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.94■□□□□ 0.78
ZNF540Q8NDQ6 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
ZNF540Q8NDQ6 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 AC244015.2-201ENST00000616358 1861 ntBASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
ZNF540Q8NDQ6 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 316.2 ms