Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CtcfQ61164 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.05■□□□□ 0.96
CtcfQ61164 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CtcfQ61164 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.04■□□□□ 0.96
CtcfQ61164 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CtcfQ61164 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CtcfQ61164 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
CtcfQ61164 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CtcfQ61164 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
CtcfQ61164 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CtcfQ61164 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CtcfQ61164 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CtcfQ61164 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CtcfQ61164 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CtcfQ61164 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CtcfQ61164 Golgb1-201ENSMUST00000023534 498 ntBASIC21.02■□□□□ 0.96
CtcfQ61164 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CtcfQ61164 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CtcfQ61164 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CtcfQ61164 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CtcfQ61164 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CtcfQ61164 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.01■□□□□ 0.95
CtcfQ61164 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CtcfQ61164 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CtcfQ61164 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CtcfQ61164 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CtcfQ61164 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CtcfQ61164 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CtcfQ61164 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
CtcfQ61164 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
CtcfQ61164 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CtcfQ61164 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CtcfQ61164 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CtcfQ61164 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CtcfQ61164 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21■□□□□ 0.95
CtcfQ61164 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21■□□□□ 0.95
CtcfQ61164 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
CtcfQ61164 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CtcfQ61164 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CtcfQ61164 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CtcfQ61164 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CtcfQ61164 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CtcfQ61164 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
CtcfQ61164 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CtcfQ61164 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
CtcfQ61164 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
CtcfQ61164 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.99■□□□□ 0.95
CtcfQ61164 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CtcfQ61164 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CtcfQ61164 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CtcfQ61164 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.98■□□□□ 0.95
CtcfQ61164 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.98■□□□□ 0.95
CtcfQ61164 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.98■□□□□ 0.95
CtcfQ61164 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CtcfQ61164 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CtcfQ61164 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CtcfQ61164 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CtcfQ61164 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CtcfQ61164 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CtcfQ61164 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CtcfQ61164 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
CtcfQ61164 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
CtcfQ61164 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.97■□□□□ 0.95
CtcfQ61164 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CtcfQ61164 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CtcfQ61164 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CtcfQ61164 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CtcfQ61164 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 193.5 ms