Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Vps28Q9D1C8 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Vps28Q9D1C8 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Vps28Q9D1C8 AC154266.1-201ENSMUST00000223190 503 ntBASIC19.75■□□□□ 0.75
Vps28Q9D1C8 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Vps28Q9D1C8 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Vps28Q9D1C8 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Vps28Q9D1C8 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Vps28Q9D1C8 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Vps28Q9D1C8 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Vps28Q9D1C8 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Vps28Q9D1C8 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps28Q9D1C8 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps28Q9D1C8 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Vps28Q9D1C8 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps28Q9D1C8 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.72■□□□□ 0.75
Vps28Q9D1C8 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps28Q9D1C8 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Vps28Q9D1C8 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vps28Q9D1C8 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Gm9988-201ENSMUST00000069786 435 ntBASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC19.7■□□□□ 0.74
Vps28Q9D1C8 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vps28Q9D1C8 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Gm42642-201ENSMUST00000200683 355 ntBASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Gm43545-201ENSMUST00000196765 2779 ntBASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vps28Q9D1C8 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps28Q9D1C8 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Vps28Q9D1C8 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps28Q9D1C8 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.67■□□□□ 0.74
Vps28Q9D1C8 Gm42778-201ENSMUST00000199644 553 ntBASIC19.67■□□□□ 0.74
Vps28Q9D1C8 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps28Q9D1C8 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps28Q9D1C8 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms