Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim63Q38HM4 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC16.03■□□□□ 0.16
Trim63Q38HM4 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC16.02■□□□□ 0.16
Trim63Q38HM4 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim63Q38HM4 Gm5953-201ENSMUST00000220644 2616 ntBASIC16.02■□□□□ 0.16
Trim63Q38HM4 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim63Q38HM4 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Trim63Q38HM4 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim63Q38HM4 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim63Q38HM4 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.02■□□□□ 0.15
Trim63Q38HM4 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trim63Q38HM4 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Trim63Q38HM4 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC16■□□□□ 0.15
Trim63Q38HM4 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Fst-202ENSMUST00000223640 2612 ntBASIC16■□□□□ 0.15
Trim63Q38HM4 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim63Q38HM4 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Trim63Q38HM4 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC16■□□□□ 0.15
Trim63Q38HM4 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim63Q38HM4 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC15.99■□□□□ 0.15
Trim63Q38HM4 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Gm6627-201ENSMUST00000218299 2386 ntBASIC15.98■□□□□ 0.15
Trim63Q38HM4 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim63Q38HM4 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Gm37194-201ENSMUST00000193092 3031 ntBASIC15.97■□□□□ 0.15
Trim63Q38HM4 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trim63Q38HM4 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim63Q38HM4 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Trim63Q38HM4 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trim63Q38HM4 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trim63Q38HM4 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 84.2 ms