Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CtcfQ61164 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC21.24■□□□□ 0.99
CtcfQ61164 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CtcfQ61164 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CtcfQ61164 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CtcfQ61164 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CtcfQ61164 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CtcfQ61164 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CtcfQ61164 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CtcfQ61164 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CtcfQ61164 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CtcfQ61164 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CtcfQ61164 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CtcfQ61164 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CtcfQ61164 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CtcfQ61164 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.22■□□□□ 0.99
CtcfQ61164 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CtcfQ61164 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CtcfQ61164 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CtcfQ61164 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CtcfQ61164 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CtcfQ61164 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CtcfQ61164 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.21■□□□□ 0.99
CtcfQ61164 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.21■□□□□ 0.99
CtcfQ61164 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CtcfQ61164 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CtcfQ61164 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CtcfQ61164 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CtcfQ61164 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CtcfQ61164 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CtcfQ61164 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CtcfQ61164 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
CtcfQ61164 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CtcfQ61164 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CtcfQ61164 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CtcfQ61164 Gm45102-201ENSMUST00000207427 857 ntBASIC21.2■□□□□ 0.98
CtcfQ61164 Rps24-207ENSMUST00000224568 714 ntBASIC21.2■□□□□ 0.98
CtcfQ61164 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CtcfQ61164 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
CtcfQ61164 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
CtcfQ61164 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CtcfQ61164 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CtcfQ61164 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CtcfQ61164 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CtcfQ61164 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CtcfQ61164 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CtcfQ61164 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC21.19■□□□□ 0.98
CtcfQ61164 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CtcfQ61164 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CtcfQ61164 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21.19■□□□□ 0.98
CtcfQ61164 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CtcfQ61164 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CtcfQ61164 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC21.18■□□□□ 0.98
CtcfQ61164 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CtcfQ61164 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.18■□□□□ 0.98
CtcfQ61164 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CtcfQ61164 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CtcfQ61164 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CtcfQ61164 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CtcfQ61164 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CtcfQ61164 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CtcfQ61164 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CtcfQ61164 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CtcfQ61164 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CtcfQ61164 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.16■□□□□ 0.98
CtcfQ61164 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CtcfQ61164 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
CtcfQ61164 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CtcfQ61164 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CtcfQ61164 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CtcfQ61164 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CtcfQ61164 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CtcfQ61164 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CtcfQ61164 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CtcfQ61164 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.15■□□□□ 0.98
CtcfQ61164 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CtcfQ61164 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CtcfQ61164 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CtcfQ61164 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CtcfQ61164 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CtcfQ61164 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CtcfQ61164 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CtcfQ61164 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.14■□□□□ 0.98
CtcfQ61164 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CtcfQ61164 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CtcfQ61164 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CtcfQ61164 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CtcfQ61164 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.14■□□□□ 0.97
CtcfQ61164 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.14■□□□□ 0.97
CtcfQ61164 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CtcfQ61164 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 172.7 ms