Protein–RNA interactions for Protein: J3QNX5

Shisa8, Cysteine-knot AMPAR-modulating protein 39, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa8J3QNX5 Gm5921-201ENSMUST00000075898 882 ntBASIC17.63■□□□□ 0.41
Shisa8J3QNX5 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shisa8J3QNX5 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Shisa8J3QNX5 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Shisa8J3QNX5 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Shisa8J3QNX5 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Shisa8J3QNX5 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.63■□□□□ 0.41
Shisa8J3QNX5 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Shisa8J3QNX5 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Shisa8J3QNX5 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Shisa8J3QNX5 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Gm43530-201ENSMUST00000195920 274 ntBASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shisa8J3QNX5 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.58■□□□□ 0.41
Shisa8J3QNX5 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shisa8J3QNX5 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shisa8J3QNX5 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shisa8J3QNX5 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
Shisa8J3QNX5 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shisa8J3QNX5 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Shisa8J3QNX5 Gm40881-201ENSMUST00000223397 166 ntBASIC17.58■□□□□ 0.4
Shisa8J3QNX5 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shisa8J3QNX5 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shisa8J3QNX5 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shisa8J3QNX5 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shisa8J3QNX5 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Shisa8J3QNX5 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.57■□□□□ 0.4
Shisa8J3QNX5 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shisa8J3QNX5 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Shisa8J3QNX5 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Shisa8J3QNX5 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Shisa8J3QNX5 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shisa8J3QNX5 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.56■□□□□ 0.4
Shisa8J3QNX5 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shisa8J3QNX5 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC17.56■□□□□ 0.4
Shisa8J3QNX5 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC17.56■□□□□ 0.4
Shisa8J3QNX5 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Shisa8J3QNX5 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms