Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 AC137127.1-201ENSMUST00000213466 1078 ntBASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Vps28Q9D1C8 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Cdkn3-203ENSMUST00000227149 1952 ntBASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Golph3-202ENSMUST00000226517 2359 ntBASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Vps28Q9D1C8 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Vps28Q9D1C8 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Vps28Q9D1C8 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC19.89■□□□□ 0.78
Vps28Q9D1C8 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Vps28Q9D1C8 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vps28Q9D1C8 Gm18284-201ENSMUST00000172604 624 ntBASIC19.89■□□□□ 0.77
Vps28Q9D1C8 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vps28Q9D1C8 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC19.89■□□□□ 0.77
Vps28Q9D1C8 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vps28Q9D1C8 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.89■□□□□ 0.77
Vps28Q9D1C8 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Vps28Q9D1C8 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Vps28Q9D1C8 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.87■□□□□ 0.77
Vps28Q9D1C8 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps28Q9D1C8 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps28Q9D1C8 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps28Q9D1C8 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps28Q9D1C8 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps28Q9D1C8 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps28Q9D1C8 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
Vps28Q9D1C8 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Gm8495-201ENSMUST00000188740 694 ntBASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps28Q9D1C8 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms