Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sh3rf1Q69ZI1 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sh3rf1Q69ZI1 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Sh3rf1Q69ZI1 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sh3rf1Q69ZI1 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.63■□□□□ 0.73
Sh3rf1Q69ZI1 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sh3rf1Q69ZI1 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Sh3rf1Q69ZI1 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Gm43137-201ENSMUST00000198052 594 ntBASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sh3rf1Q69ZI1 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sh3rf1Q69ZI1 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Sh3rf1Q69ZI1 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Sh3rf1Q69ZI1 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Sh3rf1Q69ZI1 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Sh3rf1Q69ZI1 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
Sh3rf1Q69ZI1 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Sh3rf1Q69ZI1 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Sh3rf1Q69ZI1 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC19.58■□□□□ 0.72
Sh3rf1Q69ZI1 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Sh3rf1Q69ZI1 Gm6139-201ENSMUST00000079261 882 ntBASIC19.58■□□□□ 0.72
Sh3rf1Q69ZI1 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Sh3rf1Q69ZI1 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Sh3rf1Q69ZI1 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Sh3rf1Q69ZI1 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Sh3rf1Q69ZI1 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms