Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CtcfQ61164 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CtcfQ61164 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CtcfQ61164 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.34■■□□□ 1.01
CtcfQ61164 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CtcfQ61164 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CtcfQ61164 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.34■■□□□ 1.01
CtcfQ61164 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CtcfQ61164 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CtcfQ61164 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CtcfQ61164 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CtcfQ61164 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CtcfQ61164 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
CtcfQ61164 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.32■■□□□ 1
CtcfQ61164 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CtcfQ61164 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.32■■□□□ 1
CtcfQ61164 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.31■■□□□ 1
CtcfQ61164 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CtcfQ61164 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC21.31■■□□□ 1
CtcfQ61164 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CtcfQ61164 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
CtcfQ61164 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CtcfQ61164 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.31■■□□□ 1
CtcfQ61164 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.31■■□□□ 1
CtcfQ61164 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.31■■□□□ 1
CtcfQ61164 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CtcfQ61164 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CtcfQ61164 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.3■■□□□ 1
CtcfQ61164 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CtcfQ61164 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
CtcfQ61164 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CtcfQ61164 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.3■■□□□ 1
CtcfQ61164 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC21.3■■□□□ 1
CtcfQ61164 Fam105a-203ENSMUST00000226170 3043 ntBASIC21.3■■□□□ 1
CtcfQ61164 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.3■■□□□ 1
CtcfQ61164 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC21.3■■□□□ 1
CtcfQ61164 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CtcfQ61164 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CtcfQ61164 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.3■■□□□ 1
CtcfQ61164 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CtcfQ61164 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.3■■□□□ 1
CtcfQ61164 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CtcfQ61164 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CtcfQ61164 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CtcfQ61164 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CtcfQ61164 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CtcfQ61164 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CtcfQ61164 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.29■■□□□ 1
CtcfQ61164 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CtcfQ61164 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.29■■□□□ 1
CtcfQ61164 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.29■■□□□ 1
CtcfQ61164 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.29■■□□□ 1
CtcfQ61164 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC21.29■■□□□ 1
CtcfQ61164 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CtcfQ61164 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CtcfQ61164 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.28■■□□□ 1
CtcfQ61164 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.28■■□□□ 1
CtcfQ61164 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CtcfQ61164 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC21.28■■□□□ 1
CtcfQ61164 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CtcfQ61164 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CtcfQ61164 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.28■■□□□ 1
CtcfQ61164 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.28■■□□□ 1
CtcfQ61164 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC21.27■■□□□ 1
CtcfQ61164 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CtcfQ61164 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC21.27■■□□□ 1
CtcfQ61164 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CtcfQ61164 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CtcfQ61164 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
CtcfQ61164 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CtcfQ61164 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CtcfQ61164 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
CtcfQ61164 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CtcfQ61164 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.26■□□□□ 0.99
CtcfQ61164 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.26■□□□□ 0.99
CtcfQ61164 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CtcfQ61164 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CtcfQ61164 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CtcfQ61164 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CtcfQ61164 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CtcfQ61164 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
CtcfQ61164 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CtcfQ61164 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CtcfQ61164 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CtcfQ61164 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CtcfQ61164 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CtcfQ61164 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CtcfQ61164 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CtcfQ61164 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CtcfQ61164 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.24■□□□□ 0.99
CtcfQ61164 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms